PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_28264_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SBP

Protein Properties

Length: 1152aa MW: 127584 Da PI: 8.2225

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28264_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.4	6.5e-41	143	220	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Neem_28264_f_1 143 MCQVDNCKEDLSNAKDYHRRHKVCEVHSKSSKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 220 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-33	138	205	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.026	141	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-37	142	222	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-29	144	217	IPR004333	Transcription factor, SBP-box
CDD	cd00204	3.31E-4	849	991	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1152 aa Download sequence Send to blast
MEEVGAQVAP PILMHQTLSS RFCEPPSMAR KRNLSYQNPN FHQHQHQHRA QPRLDNWNPK 60 LWNWDSVGFV AKPAESEAIR LGGAPASEPN KIDKKNITVS VANEDDGRLD LNLAGGLNTV 120 EEPASRPGKR VRSGSPGSAA YPMCQVDNCK EDLSNAKDYH RRHKVCEVHS KSSKALVGKQ 180 MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVTSRLLIP GNQNNATPHP 240 GNLDIVNLLT AFARAQGKSE EKSISCTPVP DRDQLIMILS KINSLPLPAD LAAKLPNIGS 300 SNKKNPEQTP SDFQNRLNLN TSSSSTMDLL AVLSATLATS APDALAMLSQ KSSHGSDSEK 360 TKSSCPDQTT PNFLKRTTLD FPSVGGERSS TSYQSPDSEG QVQETRVNLP LQLFSSSPED 420 DSPPKLSSSR KYFSSDSSNP IEERSPSSSP VMQTLFPMQS TSETVKSEKL SIGKEFNANF 480 AGSQTGGSVM PLELFGSSNK ATDNCSFQSF PYQAGYTSSS GSDHSPSSLN SDAQDSNVVI 540 PPQDRTGRII FKLFDKDPSH FPGTLRKQIY NWLSNSPSEM ESYIRPGCVV LSIYLSMSCA 600 AWEQLEGNLL QNVNSLVQDL DSDFWRKARF LVHTGKQLAS HKEVSAWCLI LLYTDDPNGN 660 GYNSWKIRVC KSWRTWSSPE LISVSPLAVV GGQEISLKLR GRNLTNPGTK IHCTFMGGYA 720 SQEVTGLTCR GTMYDEINLG GLKFQDTCTS VFGRFFVEVE NGFKGNSFPV IIADATICKE 780 LRLLESEFDA EAKICDIISE DQAHDYGRPR SREEVLHFLN ELGWLFQRKR TSSVIEGHIY 840 SFSRFKFLLI FSVERGCCAL VKAILDMLVE GNLTMDGLSR ESFEMLSEIQ LLNRAVKRRC 900 RRMVDLLIHY SITSSSETSP KYIFAPNLAG PGGITPLHLA ASASDSEDVI DALTNDPQEI 960 GLSCWNSLLD AGGQSPYSYA IMRNNHSYNK LVARKLSDKR NGQVSILVGM EIEQPGLTAD 1020 QGHGIKQGRK SCTKCAVVAA KFNRRVRGSQ GLLHRPYIHS MLAIAAVCVC VCLFLRGSPD 1080 IGLVAPFKWE NLDYGPNLEE VFSDCGNVAA AYNTEVKGCR FEVRRGGEIG VACYTLHLKK 1140 MDIYPYRHRI KI

Sequence ? help Back to Top

Protein Sequence Length: 1152 aa Download sequence Send to blast

MEEVGAQVAP PILMHQTLSS RFCEPPSMAR KRNLSYQNPN FHQHQHQHRA QPRLDNWNPK  60
LWNWDSVGFV AKPAESEAIR LGGAPASEPN KIDKKNITVS VANEDDGRLD LNLAGGLNTV  120
EEPASRPGKR VRSGSPGSAA YPMCQVDNCK EDLSNAKDYH RRHKVCEVHS KSSKALVGKQ  180
MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVTSRLLIP GNQNNATPHP  240
GNLDIVNLLT AFARAQGKSE EKSISCTPVP DRDQLIMILS KINSLPLPAD LAAKLPNIGS  300
SNKKNPEQTP SDFQNRLNLN TSSSSTMDLL AVLSATLATS APDALAMLSQ KSSHGSDSEK  360
TKSSCPDQTT PNFLKRTTLD FPSVGGERSS TSYQSPDSEG QVQETRVNLP LQLFSSSPED  420
DSPPKLSSSR KYFSSDSSNP IEERSPSSSP VMQTLFPMQS TSETVKSEKL SIGKEFNANF  480
AGSQTGGSVM PLELFGSSNK ATDNCSFQSF PYQAGYTSSS GSDHSPSSLN SDAQDSNVVI  540
PPQDRTGRII FKLFDKDPSH FPGTLRKQIY NWLSNSPSEM ESYIRPGCVV LSIYLSMSCA  600
AWEQLEGNLL QNVNSLVQDL DSDFWRKARF LVHTGKQLAS HKEVSAWCLI LLYTDDPNGN  660
GYNSWKIRVC KSWRTWSSPE LISVSPLAVV GGQEISLKLR GRNLTNPGTK IHCTFMGGYA  720
SQEVTGLTCR GTMYDEINLG GLKFQDTCTS VFGRFFVEVE NGFKGNSFPV IIADATICKE  780
LRLLESEFDA EAKICDIISE DQAHDYGRPR SREEVLHFLN ELGWLFQRKR TSSVIEGHIY  840
SFSRFKFLLI FSVERGCCAL VKAILDMLVE GNLTMDGLSR ESFEMLSEIQ LLNRAVKRRC  900
RRMVDLLIHY SITSSSETSP KYIFAPNLAG PGGITPLHLA ASASDSEDVI DALTNDPQEI  960
GLSCWNSLLD AGGQSPYSYA IMRNNHSYNK LVARKLSDKR NGQVSILVGM EIEQPGLTAD  1020
QGHGIKQGRK SCTKCAVVAA KFNRRVRGSQ GLLHRPYIHS MLAIAAVCVC VCLFLRGSPD  1080
IGLVAPFKWE NLDYGPNLEE VFSDCGNVAA AYNTEVKGCR FEVRRGGEIG VACYTLHLKK  1140
MDIYPYRHRI KI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-32	134	217	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	893	898	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC015450	4e-34	AC015450.5 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete sequence.
GenBank	CP002684	4e-34	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435483.1	0.0	squamosa promoter-binding-like protein 14 isoform X1
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2H5PAH8	0.0	A0A2H5PAH8_CITUN; Uncharacterized protein
STRING	XP_006435483.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]