PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_28170_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bZIP | ||||||||
Protein Properties | Length: 311aa MW: 34731.6 Da PI: 4.6692 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.6 | 3.1e-09 | 135 | 171 | 10 | 46 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 + +NR AA rsR+RKk++++ Le k+ Le+e ++L Neem_28170_f_1 135 RLRNRDAAVRSRERKKMYVKDLEMKSRYLEGECRKLG 171 68*****************************998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0066 | 131 | 190 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.4E-10 | 135 | 188 | No hit | No description |
PROSITE profile | PS50217 | 8.623 | 135 | 185 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 135 | 148 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.56E-9 | 135 | 186 | No hit | No description |
CDD | cd14704 | 1.10E-14 | 135 | 182 | No hit | No description |
Pfam | PF00170 | 2.5E-7 | 136 | 173 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0030968 | Biological Process | endoplasmic reticulum unfolded protein response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MEDMECLVDD IDWENLVTEL MDPSSVEFSP SPDGSASARI GEIESLLMTD NFDDLESNCP 60 SFDDFFTDIL VDTPSPPFGV EIVDLPTDDK DSNGSDESGS ASAEEEKWIL HEISVGTICG 120 GDDVLDNYVC VCTWRLRNRD AAVRSRERKK MYVKDLEMKS RYLEGECRKL GRLLQCVLAE 180 NQALRFSLQP GNAHGASLAK QESAVLLLER WGRRVIVSVD TVEIHNGHIE SLLLGSLLWF 240 LGNMCLFTLP KPIQSKLESV PLVQAEEKAP GNLAQRGAGI NMMIFSVVKS RRCKASRRKM 300 KIHSHVLRVL V |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00019 | PBM | Transfer from AT1G42990 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435475.1 | 1e-106 | bZIP transcription factor 60 | ||||
TrEMBL | A0A067HBZ6 | 1e-105 | A0A067HBZ6_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TB17 | 1e-105 | V4TB17_9ROSI; Uncharacterized protein | ||||
STRING | XP_006435475.1 | 1e-106 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4634 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G42990.1 | 3e-22 | basic region/leucine zipper motif 60 |