PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28139_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YA
Protein Properties Length: 105aa    MW: 11817.1 Da    PI: 10.4114
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28139_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA89.93.4e-281666158
       CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                    +ep++VNaKQy++Il+RRq+Rak+e+       ++kpylheSRh hAlrR+Rg+gGrF
  Neem_28139_f_1 16 EEPVFVNAKQYHGILRRRQSRAKAES-------ENKPYLHESRHLHALRRARGCGGRF 66
                    69***********************9.......4677********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-301469IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115229.2961569IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-231766IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068602040IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MGIQQAGVPL PTDTVEEPVF VNAKQYHGIL RRRQSRAKAE SENKPYLHES RHLHALRRAR  60
GCGGRFLNSK KNENQQKEMA SNDKSQSNLN LNSDKNELSS SDGKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-191574166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4721772e-49AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468306.13e-64nuclear transcription factor Y subunit A-7 isoform X2
RefseqXP_006468307.12e-64nuclear transcription factor Y subunit A-7 isoform X3
SwissprotQ84JP12e-43NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A067G6Q64e-63A0A067G6Q6_CITSI; Uncharacterized protein
TrEMBLA0A067GIN47e-63A0A067GIN4_CITSI; Uncharacterized protein
STRINGXP_006468304.12e-63(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.27e-46nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]