PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27900_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 180aa    MW: 20697 Da    PI: 9.1739
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27900_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.3e-113486557
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57
                    + +rr ++NReAArrsR RK+a+++ L   +  L++eN++ +  + +    + 
  Neem_27900_f_1 34 RHQRRIMSNREAARRSRVRKRAQLDDLIADANHLQNENRQIRYMILHSFRDYM 86
                    679************************************99977766655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-93094IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.7E-103076No hitNo description
PfamPF077162.7E-83276IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.8983275IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-93484No hitNo description
CDDcd147023.10E-123578No hitNo description
PROSITE patternPS0003603752IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MATAGGNTPS GSNNFRNLGS EGDHLQIPNA VDQRHQRRIM SNREAARRSR VRKRAQLDDL  60
IADANHLQNE NRQIRYMILH SFRDYMNLLR ENSLLNAQRE KLQRKLSDFY EITRSCSCSN  120
ENGVYVPPTT GDYAHLVASN YGTFHHAQLN SVRFNEPNNI IRHADPLPVR DPCAQPTYYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652RRSRVRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.12e-10basic leucine-zipper 2