PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_27844_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 452aa MW: 49327.3 Da PI: 8.2959 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.3e-30 | 201 | 259 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+++d +++++tYeg+Hnh+ Neem_27844_f_1 201 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCSQDRTILVTTYEGNHNHP 259 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-33 | 185 | 261 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 193 | 261 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.217 | 195 | 261 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-36 | 200 | 260 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 202 | 259 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MNFFADDVKD KLASDNQETS SVDHTGLNLS TPNSSSEKFN IEKTSKNIEY KPQENELAVL 60 QADLNKMNVE NQRLRGLLNQ VNSDYRALQM HLLTFMQRQQ IRRPGNIPVH EMINGGKVAV 120 ARQFMDLGQA AAAEKDDQLS HSSSEEARQD QDAAQSAAGW CSNKVPRFSS SRDVENASQT 180 MSMIRKARVS VRARSEASMI SDGCQWRKYG QKMAKGNPCP RAYYRCTMAS GCPVRKQVQR 240 CSQDRTILVT TYEGNHNHPL PPAAMAMAST TSAAVSMLLS GSMPSADGIV NADFLTKSSL 300 PFSPSLASLS ASAPFPTITL DLTHNPIPNP SQFQRQLCQF HFPSPNNLPQ NFVTMPQVFA 360 HAVINNQSSF MGLLNSMGLE QPQSAQNLMP ANDTISAATA AAITADPSFT AALVAAITSV 420 IGNVHQNQNG NSNNNTTTRN SSDKIEHMKN SL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-24 | 187 | 263 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031069 | 2e-31 | KF031069.1 Gossypium hirsutum WRKY transcription factor 1 (WRKY1) mRNA, complete cds. | |||
GenBank | KF669824 | 2e-31 | KF669824.1 Gossypium hirsutum WRKY transcription factor 16 (WRKY16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006452416.2 | 1e-152 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-102 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A067F7F6 | 1e-152 | A0A067F7F6_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P286 | 1e-152 | A0A2H5P286_CITUN; Uncharacterized protein | ||||
STRING | XP_006452416.1 | 1e-152 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19246 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 2e-72 | WRKY family protein |