PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_27397_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 461aa MW: 51429.3 Da PI: 6.5164 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 91 | 146 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Neem_27397_f_1 91 KKRYHRHTQHQIQEMETFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 688999***********************************************999 PP | |||||||
2 | START | 161.2 | 7.5e-51 | 280 | 458 | 1 | 164 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el+++a+ ++p+W++ + +n++e++++f+++ + ++ ea+r+s+vv+m++ lve+l+d++ qW++ + +a+tl Neem_27397_f_1 280 ELAVAAMEELFRMAQMGQPLWMTGLdgttSVLNEEEYVRTFPRGIGpkptgFKCEASRESAVVIMNHISLVEILMDVN-QWSTVFSgivsRAMTL 373 57899********************999999************999********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 ev+s+g galq+m++e+q++splvp R++++vRy++q+g+g+w++vdvS+d+ ++ p vR++++pSg+li++++ng+skv Neem_27397_f_1 374 EVLSTGvagnynGALQVMTSEFQVPSPLVPtRESYYVRYCKQHGEGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKV 458 ************************************************************995....*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-23 | 70 | 146 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.21E-19 | 79 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.73 | 88 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-19 | 89 | 152 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.05E-18 | 91 | 149 | No hit | No description |
Pfam | PF00046 | 4.1E-18 | 91 | 146 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 32.91 | 271 | 461 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.22E-26 | 271 | 458 | No hit | No description |
CDD | cd08875 | 1.68E-101 | 275 | 458 | No hit | No description |
SMART | SM00234 | 1.1E-27 | 280 | 460 | IPR002913 | START domain |
Pfam | PF01852 | 6.1E-41 | 281 | 458 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MPTGVMIPAR NMPSVIGRNG NVGGLGSSSG GLSLSQPNMM EGQLHPLDMT QNTSESEIAR 60 LREEEFDSTK SGSENHEGAS GDDQEQQPPK KKRYHRHTQH QIQEMETFFK ECPHPDDKQR 120 KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRAE NEKLRADNMR YREALSNASC 180 PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVVNYPL LSPPVPPRPL 240 ELGVGNFGGQ PGMGGEMYGA ADLLRSINTP TEADKPMIIE LAVAAMEELF RMAQMGQPLW 300 MTGLDGTTSV LNEEEYVRTF PRGIGPKPTG FKCEASRESA VVIMNHISLV EILMDVNQWS 360 TVFSGIVSRA MTLEVLSTGV AGNYNGALQV MTSEFQVPSP LVPTRESYYV RYCKQHGEGT 420 WAVVDVSLDN LRPSPAVRCR RRPSGCLIQE MPNGYSKVNK F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM477824 | 3e-67 | AM477824.1 Vitis vinifera contig VV78X054788.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024046029.1 | 0.0 | homeobox-leucine zipper protein HDG2 isoform X2 | ||||
Refseq | XP_024950958.1 | 0.0 | homeobox-leucine zipper protein HDG2 isoform X2 | ||||
Swissprot | Q0J9X2 | 0.0 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A2H5QHC5 | 0.0 | A0A2H5QHC5_CITUN; Uncharacterized protein | ||||
STRING | XP_006469695.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447537.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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