PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2732_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family RAV
Protein Properties Length: 357aa    MW: 41131.5 Da    PI: 8.4637
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2732_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2271.2e-0852911155
            AP2 11 krgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   ++g W A+I+       + +r +lg+f +++eAa a++ a+ +l+ 
  Neem_2732_f_5 52 QNGHWGAQIYA------NhQRTWLGTFKSEKEAAMAYDSAAIRLRS 91
                   5788****999......44**********99************986 PP
2B389.82.2e-28165262186
                    EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                    f+k+ltpsdv+k++rlv+pkkfa ++            +++k+ ++ l++ d+  r W+++++y+++s+++v+t+GW++Fvk+n+Lk++D+++F++
  Neem_2732_f_5 165 FQKELTPSDVGKLNRLVIPKKFAVKYfpqisesreelaENDKADDVLLVFHDRLMRLWKFRYCYWRSSQSFVFTRGWNRFVKENQLKANDTITFYF 260
                    99******************************99999988899****************************************************6 PP

                    -S CS
             B3  85 dg 86 
                     +
  Neem_2732_f_5 261 CD 262
                    53 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-1443100IPR016177DNA-binding domain
CDDcd000186.76E-2243101No hitNo description
SMARTSM003801.0E-1544105IPR001471AP2/ERF domain
PROSITE profilePS5103216.5424499IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-154499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.7E-32162260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-27164263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-24164260No hitNo description
SMARTSM010191.2E-21165275IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915165277IPR003340B3 DNA binding domain
PfamPF023622.8E-26165263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEESMLSMIS NGKTNTIAES SDSVSSTRTI PVSKHSRHAS VASKFKGLVP QQNGHWGAQI  60
YANHQRTWLG TFKSEKEAAM AYDSAAIRLR SADSHRNFPW TKITLEEPNF QSHYSTEAVL  120
NMIRDGSYAS KFAEFLRNHS KSVQKDKFTQ METHTNGWLM CRQLFQKELT PSDVGKLNRL  180
VIPKKFAVKY FPQISESREE LAENDKADDV LLVFHDRLMR LWKFRYCYWR SSQSFVFTRG  240
WNRFVKENQL KANDTITFYF CDLREHANVT KTFCMIDVIK GESSDSLTEV SNRCADIQVD  300
LQLQLGQRVV HDNNQNRVEE DDKRSKLQAA EEMELIGPSP ISDSETKPLK LFGVAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2716425813100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024953690.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_024953691.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_024953692.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-103RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2H5PWN10.0A0A2H5PWN1_CITUN; Uncharacterized protein
STRINGXP_006473975.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-106RAV family protein