PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_27310_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 103aa MW: 11341.5 Da PI: 4.763 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.5 | 8e-12 | 54 | 79 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++rtG C yG++C+F+H+ Neem_27310_f_1 54 PGEPDCLFYLRTGLCGYGSNCRFNHP 79 5789*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7E-5 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.291 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 55 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 58 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-5 | 59 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MNSVPPMPDN RQVKSNAVSN QSADNIEEAI WRLKIHDSQE GGGVAQSSPY PDRPGEPDCL 60 FYLRTGLCGY GSNCRFNHPA YAAQGTQYRE ELPERVGQPD CGV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447662.1 | 1e-58 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_006469597.1 | 1e-58 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q94AD9 | 1e-31 | C3H3_ARATH; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A067EWT3 | 2e-57 | A0A067EWT3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067F7T5 | 2e-57 | A0A067F7T5_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067F8M6 | 3e-57 | A0A067F8M6_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PS26 | 2e-57 | A0A2H5PS26_CITUN; Uncharacterized protein | ||||
TrEMBL | A0A2H5PS58 | 3e-57 | A0A2H5PS58_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U4N8 | 3e-57 | V4U4N8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469597.1 | 5e-58 | (Citrus sinensis) | ||||
STRING | XP_006447662.1 | 5e-58 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15746 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 5e-34 | C3H family protein |
Publications ? help Back to Top | |||
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