PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_2718_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 29472.8 Da PI: 8.7835 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87 | 3.4e-27 | 13 | 157 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya.tgkrknra................. 77 p+G+ F+Ptd+e+v+++Lk+k+ g++l++ ++i+++d+y+ P +Lp +++++ewyf+++r + + t++ r Neem_2718_f_2 13 PVGYIFRPTDSEIVCYFLKNKILGQHLPA-NFIPTIDVYSKSPDQLPfYdFRHGRDNEWYFYTTRPNCKLaTDDDDFRHgrdnewyfyttrpnckl 107 89***************************.99***************6433345788******998755425554444344578899999999999 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t++gy + + +k++++ ++++vg ++L++y+gr pkg++t+W++ eyr+ Neem_2718_f_2 108 aTDDGYYSVS-MEKNIFK-DNRVVGFLQILTYYQGRPPKGRRTNWIIYEYRV 157 999**99866.5699999.899****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-19 | 5 | 79 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.696 | 12 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-15 | 13 | 157 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.37E-16 | 90 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MESSVKKESA KIPVGYIFRP TDSEIVCYFL KNKILGQHLP ANFIPTIDVY SKSPDQLPFY 60 DFRHGRDNEW YFYTTRPNCK LATDDDDFRH GRDNEWYFYT TRPNCKLATD DGYYSVSMEK 120 NIFKDNRVVG FLQILTYYQG RPPKGRRTNW IIYEYRVNPD VIPVCELHNP IRAEMKNFVM 180 CKVVLTEQRD SGFPTLKHDA AVAGSLEPFS QLKFMGCGFL LPTEIAKRVS CKQFMHKVLT 240 SSSMNRKDIV HVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-17 | 12 | 157 | 15 | 140 | Stress-induced transcription factor NAC1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17601 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 5e-25 | NAC domain containing protein 57 |