PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_27137_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 384aa MW: 43185.7 Da PI: 6.5128 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 6.2e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++k+l++ e ik+vdiyk++PwdLpk ++++eke+yf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ Neem_27137_f_3 14 MLPGFRFHPTDEELVGFYLKRKIQQKSLPI-ELIKQVDIYKYDPWDLPKLATTGEKECYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107 579***************************.89***************8888899***************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra kg ktdW+mhe+rl Neem_27137_f_3 108 dGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 56667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-57 | 13 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.759 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDEKNDFDKI DEVMLPGFRF HPTDEELVGF YLKRKIQQKS LPIELIKQVD IYKYDPWDLP 60 KLATTGEKEC YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPSLSDSAPQ KKILEKTIPP NDAWAICRIF KKTNSMAQRA 180 LSHSWVSPLP ESTAASDVLS QGANCTHFSS ENVSCVTDIG SVIQLCGNND LQQYSTANFS 240 ALDIPSYKAL NPNFYKPLLL PPPSNGAGEL PNNFMFSPPP EISGPGNLFG DFEGPQQQQP 300 RGFSFSLPQE MQANMTAEED ETEISRKNPN ANQDNNSWGT IRSIGFPFSL PLNLPDAWKP 360 NLPWDSPPCP SEMSTTYSTN NCYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-51 | 1 | 175 | 1 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00537 | DAP | Transfer from AT5G39820 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024037544.1 | 0.0 | protein FEZ isoform X2 | ||||
Swissprot | Q9FIW5 | 1e-102 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 1e-102 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A067GAV8 | 0.0 | A0A067GAV8_CITSI; Uncharacterized protein | ||||
STRING | XP_006482563.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 1e-105 | NAC domain containing protein 94 |
Publications ? help Back to Top | |||
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