PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27137_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 384aa    MW: 43185.7 Da    PI: 6.5128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27137_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.16.2e-52141411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     + pGfrFhPtdeelv +yLk+k+++k+l++ e ik+vdiyk++PwdLpk ++++eke+yf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+
  Neem_27137_f_3  14 MLPGFRFHPTDEELVGFYLKRKIQQKSLPI-ELIKQVDIYKYDPWDLPKLATTGEKECYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107
                     579***************************.89***************8888899***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Neem_27137_f_3 108 dGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141
                     56667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-5713172IPR003441NAC domain
PROSITE profilePS5100554.75914172IPR003441NAC domain
PfamPF023658.7E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDEKNDFDKI DEVMLPGFRF HPTDEELVGF YLKRKIQQKS LPIELIKQVD IYKYDPWDLP  60
KLATTGEKEC YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYRGRAAKGI KTDWMMHEFR LPSLSDSAPQ KKILEKTIPP NDAWAICRIF KKTNSMAQRA  180
LSHSWVSPLP ESTAASDVLS QGANCTHFSS ENVSCVTDIG SVIQLCGNND LQQYSTANFS  240
ALDIPSYKAL NPNFYKPLLL PPPSNGAGEL PNNFMFSPPP EISGPGNLFG DFEGPQQQQP  300
RGFSFSLPQE MQANMTAEED ETEISRKNPN ANQDNNSWGT IRSIGFPFSL PLNLPDAWKP  360
NLPWDSPPCP SEMSTTYSTN NCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5111751171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024037544.10.0protein FEZ isoform X2
SwissprotQ9FIW51e-102NAC94_ARATH; Putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-102FEZ_ARATH; Protein FEZ
TrEMBLA0A067GAV80.0A0A067GAV8_CITSI; Uncharacterized protein
STRINGXP_006482563.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-105NAC domain containing protein 94
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]