PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_26988_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GATA | ||||||||
Protein Properties | Length: 136aa MW: 14697.9 Da PI: 3.9452 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 35.8 | 1.1e-11 | 1 | 24 | 12 | 35 |
GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35 +Rrgp g++tLCnaCGl+++ kg+ Neem_26988_f_1 1 MRRGPAGPRTLCNACGLMWANKGT 24 5********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 3.7E-10 | 1 | 29 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.86E-11 | 1 | 31 | No hit | No description |
SuperFamily | SSF57716 | 1.43E-6 | 1 | 33 | No hit | No description |
Pfam | PF00320 | 1.6E-9 | 1 | 24 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MRRGPAGPRT LCNACGLMWA NKGTLRDLSK GGRNLSMDQI EPETPMDVKP SIMEGEFSGN 60 HDEHGTPEDP SKAVDEGSNN PSIDPDEEDM HGTAEDLTHS LPMGLVHSSA DDDEQEPLVE 120 LANPSDTDID IPSNFD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006433794.1 | 1e-86 | GATA transcription factor 24 isoform X1 | ||||
Refseq | XP_006472433.1 | 1e-86 | GATA transcription factor 24-like isoform X1 | ||||
Refseq | XP_024039692.1 | 1e-86 | GATA transcription factor 24 isoform X1 | ||||
Refseq | XP_024039693.1 | 1e-86 | GATA transcription factor 24 isoform X1 | ||||
Refseq | XP_024952243.1 | 1e-86 | GATA transcription factor 24-like isoform X1 | ||||
TrEMBL | A0A067GNE4 | 3e-85 | A0A067GNE4_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P729 | 2e-82 | A0A2H5P729_CITUN; Uncharacterized protein | ||||
TrEMBL | A0A2H5P7T0 | 1e-82 | A0A2H5P7T0_CITUN; Uncharacterized protein | ||||
TrEMBL | V4V508 | 3e-85 | V4V508_9ROSI; Uncharacterized protein | ||||
STRING | XP_006433794.1 | 5e-86 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12294 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 6e-16 | GATA-type zinc finger protein with TIFY domain |