PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26983_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 342aa    MW: 37866.8 Da    PI: 6.3307
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26983_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.69.5e-27288342255
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+
  Neem_26983_f_1 288 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGT 342
                     7****************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-29272341IPR003657WRKY domain
SuperFamilySSF1182901.1E-23280341IPR003657WRKY domain
PROSITE profilePS5081125.017282342IPR003657WRKY domain
SMARTSM007743.8E-28287342IPR003657WRKY domain
PfamPF031064.4E-23289342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDKGWGLTLD SDPLTNNFFR SQPPASSSSV NSFARFRTTN RVADSVRMFP FPASLGGGRE  60
VRDLPSPSDE NRVAVDEVDF FSEKKNKVDD DNQRIITSTV NVKRENSHED VRQRTSLDVN  120
TGLHLLTANT GSDQSTVDDG VSSDMEDKRA KSEVVEGKAE DKKHEVMVPR QFLDLGPSAT  180
AEIDEASNSS SEERTLSGTP PNNNIEVASK EYVKSNGKSE MVSFDQAENS NGKRIGREES  240
PESESRGWGA NKVQKLNSSS KAMDQSNEAT MRKARVSVRA RSEAPMITDG CQWRKYGQKM  300
AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRTILITTYE GT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-18278341870Probable WRKY transcription factor 4
2lex_A7e-18278341870Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061397e-33AP006139.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT02A16, TM0243, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449767.11e-148probable WRKY transcription factor 31
SwissprotQ9XEC33e-93WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A2H5N4U21e-147A0A2H5N4U2_CITUN; Uncharacterized protein
TrEMBLV4UAG61e-147V4UAG6_9ROSI; Uncharacterized protein
STRINGXP_006449767.11e-148(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-89WRKY family protein