PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_26911_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 361aa MW: 40519 Da PI: 9.0553

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_26911_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.8	3.9e-31	71	124	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l++m++kgL ++hvkSHLQ+YR Neem_26911_f_1 71 PRLRWTPELHLCFVHAVERLGGQERATPKLVLQFMDIKGLNISHVKSHLQMYRN 124 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.547	67	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-28	67	125	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-14	68	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-22	71	126	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-8	72	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MKGIDSSERS KTSNSNETGS EDEREEIDKT CQSISGESSS NSSIELENEN KKTPAAGYSG 60 STRQYNRSKT PRLRWTPELH LCFVHAVERL GGQERATPKL VLQFMDIKGL NISHVKSHLQ 120 MYRNKKLDEP NQVLNGVSDK FRTLKGSFFH SRCGDVAAWR RYGSQTCSFG LGENNAVGKA 180 KHGLYASVAE RLLGTQNTKL NLHSHTASTC SFNEQDTSKT HQTFEEVDEL IRRFRQSHST 240 SRPSSSMERN FKTQVEERVK GQINCSKKNS SHHCNSWPMV QEAENKLKRK TWDSECNIDL 300 NLSLKIKPTI DEVLEGAEAQ STSLSLSLSS SSSSKISRLK EGYESRKQEK TTAASTLDLT 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MKGIDSSERS KTSNSNETGS EDEREEIDKT CQSISGESSS NSSIELENEN KKTPAAGYSG  60
STRQYNRSKT PRLRWTPELH LCFVHAVERL GGQERATPKL VLQFMDIKGL NISHVKSHLQ  120
MYRNKKLDEP NQVLNGVSDK FRTLKGSFFH SRCGDVAAWR RYGSQTCSFG LGENNAVGKA  180
KHGLYASVAE RLLGTQNTKL NLHSHTASTC SFNEQDTSKT HQTFEEVDEL IRRFRQSHST  240
SRPSSSMERN FKTQVEERVK GQINCSKKNS SHHCNSWPMV QEAENKLKRK TWDSECNIDL  300
NLSLKIKPTI DEVLEGAEAQ STSLSLSLSS SSSSKISRLK EGYESRKQEK TTAASTLDLT  360
L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	72	126	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	72	126	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-17	72	126	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-17	72	126	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-17	72	126	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-17	72	126	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	72	126	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	72	126	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	72	126	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	72	126	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	72	126	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	72	126	4	58	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006486285.1	4e-84	uncharacterized protein LOC102620939
Refseq	XP_024041316.1	4e-84	uncharacterized protein LOC18044186
TrEMBL	A0A2H5NJW4	1e-82	A0A2H5NJW4_CITUN; Uncharacterized protein
STRING	XP_006486285.1	2e-83	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-37	G2-like family protein