PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26821_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 354aa    MW: 39210.9 Da    PI: 9.1607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26821_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.81e-53151421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++
  Neem_26821_f_2  15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTS 108
                     79****************************.89***************8888999*************************************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Neem_26821_f_2 109 nGNHKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-656176IPR003441NAC domain
PROSITE profilePS5100562.28515176IPR003441NAC domain
PfamPF023654.4E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MESTDSSTSS QHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL  60
PGKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG NHKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLVDNNSGTK THASDLSNKK NSLRLDDWVL CRIYKKNNTQ  180
RPMDRDKDDG LEGMYVTPPT SIHQINPKPP AGKNATYGAL FEHDEHFFDG MLSTEGIQQN  240
SCVSQLASSI SKPANMSIDI VSPSTVNTFP VKRAMPPQFW NEPAGSLASS SGKRFHGDLN  300
SGNAATDDNN SFVSLLNQLP QSVQFNANSA TLLGSLGDGS LRQQFHLPSM NWNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-741517920171NAC domain-containing protein 19
3swm_B4e-741517920171NAC domain-containing protein 19
3swm_C4e-741517920171NAC domain-containing protein 19
3swm_D4e-741517920171NAC domain-containing protein 19
3swp_A4e-741517920171NAC domain-containing protein 19
3swp_B4e-741517920171NAC domain-containing protein 19
3swp_C4e-741517920171NAC domain-containing protein 19
3swp_D4e-741517920171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025712.10.0PREDICTED: NAC transcription factor 25
SwissprotQ8GY421e-117NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A061GMK30.0A0A061GMK3_THECC; NAC domain containing protein 25
STRINGEOY283340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-119NAC domain containing protein 25