PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_26798_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 317aa MW: 33904.8 Da PI: 9.0652 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.7e-39 | 73 | 133 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Neem_26798_f_1 73 PEAPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 133 67889*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-34 | 57 | 128 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.3E-33 | 76 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.665 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009625 | Biological Process | response to insect | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MVFSSVPVYL DPPNWHQQPN HHQQGTGNEN PQFPPLPPAS HVVGAAAGGP GGAGSIRPGS 60 MADRARLAKV PQPEAPLKCP RCDSTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRNV 120 PVGGGCRRNK KNKSSSSKSV VNTEKQISSN STSALPSEII GHLPQQTPQL PLMTSLHTLS 180 QYNLGNLGLS FGGIQAQIGA SSVGSSHTDV GFQIASNSSM SSAIFSAGGV QQFPFFEPPP 240 TGLYPFQSEG IEASSSIVGS MTSNSRVSEQ APVKMEDPQG LNSSRQFMGI AENNQYWSAN 300 NWTDLPGLNC SSANHLL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021278243.1 | 1e-149 | dof zinc finger protein DOF2.2 isoform X1 | ||||
TrEMBL | A0A061H030 | 1e-146 | A0A061H030_THECC; OBF-binding protein 3, putative isoform 1 | ||||
STRING | EOY34069 | 1e-147 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 4e-50 | OBF-binding protein 3 |