PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_26784_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 188aa MW: 21128.4 Da PI: 8.7212 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.1 | 5.8e-17 | 93 | 173 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ++ps+v+ +l lpkkf+++h k +++ + lede+g ++e ++ + + l++GW++F ++L egD++vF+l++ Neem_26784_f_1 93 FIKCMLPSHVSGGFWLGLPKKFCTDHLPK--KDTIIALEDENGHEYETNY--LAEK--IGLSGGWRGFSMVHKLVEGDVLVFHLIRP 173 89************************533..5679***************..4444..44***********************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-19 | 87 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-21 | 88 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-25 | 91 | 172 | No hit | No description |
Pfam | PF02362 | 5.1E-15 | 93 | 173 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-18 | 93 | 179 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.533 | 93 | 188 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAIAPNERES SSDSPSEVKR ARPPIKKENM LDSKKVICSG PENSKCNATV ICSSEKRKRA 60 TYDNLYDNEE TKSAVMMQAT HVQANLAPEF PSFIKCMLPS HVSGGFWLGL PKKFCTDHLP 120 KKDTIIALED ENGHEYETNY LAEKIGLSGG WRGFSMVHKL VEGDVLVFHL IRPFKFKKKK 180 KAEALVIE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024035070.1 | 7e-75 | B3 domain-containing protein Os01g0234100 isoform X2 | ||||
TrEMBL | A0A2H5MX91 | 8e-67 | A0A2H5MX91_CITUN; Uncharacterized protein (Fragment) | ||||
STRING | XP_006423042.1 | 7e-65 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16718 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-40 | B3 family protein |