PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_26740_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

BES1

Protein Properties

Length: 124aa MW: 13715.6 Da PI: 9.033

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_26740_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	113.3	3.8e-35	20	90	6	76
DUF822 6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 +++ E+E++k+RER+RRai++ki+ GLR+ G+y+l raD+neVl+ L++eAGw+ve+DGttyr+ + + Neem_26740_f_1 20 VRSESEKEKTKLRERQRRAITTKIFHGLRKWGGYHLSPRADINEVLRELAKEAGWIVEPDGTTYRARVENE 90 67889************************************************************877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.0E-31	20	87	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MKTTAAATSG GSGGGGVGGV RSESEKEKTK LRERQRRAIT TKIFHGLRKW GGYHLSPRAD 60 INEVLRELAK EAGWIVEPDG TTYRARVENE RKFCLFLGYC EKDSVFSGFC LWAPLIGCCE 120 NEGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006468299.1	9e-41	protein BZR1 homolog 2-like isoform X1
Swissprot	O80831	2e-22	BAM7_ARATH; Beta-amylase 7
TrEMBL	V4U899	5e-39	V4U899_9ROSI; Uncharacterized protein
STRING	XP_006468299.1	4e-40	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22944	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	2e-22	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]