PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_26712_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | CPP | ||||||||
Protein Properties | Length: 656aa MW: 71493.1 Da PI: 8.4027 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46 | 1.1e-14 | 165 | 204 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnC++s+Clk+YCeCfaag +C+ C+C +C+N+ e+ Neem_26712_f_4 165 KQKQCNCRNSRCLKLYCECFAAGIYCDG-CNCINCHNNVEH 204 89**************************.********9876 PP | |||||||
2 | TCR | 50.5 | 4.2e-16 | 266 | 305 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Neem_26712_f_4 266 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFE 305 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 7.4E-19 | 164 | 204 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.733 | 165 | 306 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.5E-12 | 166 | 201 | IPR005172 | CRC domain |
SMART | SM01114 | 1.5E-19 | 266 | 307 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 269 | 304 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MEQEISEAIG FHHVPSISKR HIAGAVGKLT VTAVTDSIAE QSVNSQSQQS QTQSHSVLQA 60 QPKSQQQVQS QAASQSQSQS QPLVPSQLLP PSQQQSSHPQ VQSQMKSPLQ AMPQRQARPQ 120 QMRMVQRVPH PVHKLPLPTL HAVKQESPRS RPWGSIEAKD GTPKKQKQCN CRNSRCLKLY 180 CECFAAGIYC DGCNCINCHN NVEHEAARQE AVGATLERNP NAFRPKIASS PHGSQDARKQ 240 SIFSPDPCPH PSTQKEDARE AQLAAKHNKG CHCKKSGCLK KYCECFQANI LCSENCKCLD 300 CKNFEGSEER RALFHGDHNA IAFMQKAANA AINGAVGSSG YGTPLASNKR KSEELSFGVT 360 AKDHLINRNA QSQQGNHLRN CAVPSSQSFP VSWTANAAVL GSSKSALRSP LADILQPQDM 420 KELCSFLVIV SSEATKTLTE KAGKTDRQKS TTVASSIQDS EDGKKGNAVH NGVPDDRLSG 480 NQMDVDRTSG SGSDAGDLLN ERPLSPGTRA LMCDEEDTVF MSAGPPTGLA NHCKNTNQKS 540 NGYESTRFYA EQERLILTRF RDFLNRLITC GSIKETMCSP LVKSETRTQQ KPVEDGTIRA 600 GTEARRYKEL YDDACPRSAV PMTVESSQTV STVTATHNND LPMKIGLPIG NGFDGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-31 | 157 | 315 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 5e-31 | 157 | 315 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006476073.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Swissprot | Q9SZD1 | 1e-144 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A067GJ65 | 0.0 | A0A067GJ65_CITSI; Uncharacterized protein | ||||
STRING | XP_006476073.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-145 | Tesmin/TSO1-like CXC domain-containing protein |