PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_26425_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 569aa MW: 64524.6 Da PI: 4.97 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.4 | 6.3e-19 | 16 | 113 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 f+k+l++sdv++++r++lpkk ae+h + ++e++ +++ d++g +W++k+++ +++s++yvl+ ++ +Fv+ +gL+ gDf++ + + Neem_26425_f_1 16 FQKELKNSDVSSLRRMILPKKAAEAHlpilE--SKEGIFISMDDLDGlHVWSFKYRFwpNNNSRMYVLE-NTGDFVNTHGLQLGDFIIVYQ--Dn 105 99**************************644..557899********9*******9989999999***9.******************993..33 PP SEE..EEE CS B3 88 sefelvvk 95 +++++v++ Neem_26425_f_1 106 QNQNYVIQ 113 66666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-27 | 8 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.68E-25 | 14 | 116 | No hit | No description |
SuperFamily | SSF101936 | 4.32E-21 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.827 | 16 | 118 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-19 | 16 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-15 | 16 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF118203 | 4.32E-133 | 194 | 568 | IPR004907 | ATPase, V1 complex, subunit C |
CDD | cd14785 | 8.70E-149 | 199 | 566 | IPR004907 | ATPase, V1 complex, subunit C |
Pfam | PF03223 | 2.4E-123 | 199 | 562 | IPR004907 | ATPase, V1 complex, subunit C |
Gene3D | G3DSA:1.20.1460.10 | 2.6E-60 | 235 | 356 | No hit | No description |
Gene3D | G3DSA:3.30.70.100 | 9.4E-33 | 357 | 445 | No hit | No description |
Gene3D | G3DSA:1.20.1460.10 | 2.6E-60 | 446 | 506 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0015991 | Biological Process | ATP hydrolysis coupled proton transport | ||||
GO:0043255 | Biological Process | regulation of carbohydrate biosynthetic process | ||||
GO:0000221 | Cellular Component | vacuolar proton-transporting V-type ATPase, V1 domain | ||||
GO:0000325 | Cellular Component | plant-type vacuole | ||||
GO:0005794 | Cellular Component | Golgi apparatus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046961 | Molecular Function | proton-transporting ATPase activity, rotational mechanism |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MSIFKVIDPN RLRFLFQKEL KNSDVSSLRR MILPKKAAEA HLPILESKEG IFISMDDLDG 60 LHVWSFKYRF WPNNNSRMYV LENTGDFVNT HGLQLGDFII VYQDNQNQNY VIQAKKASDQ 120 DMYTNFTSDS VSDILLNDYE VNRSSSFYVN YPMAEDTGLS FIYDTTTFSN DSPLDFLGGS 180 LTSYSREKTQ SGPEMASRYW VVSLPVQNSA STLGNQLQEQ ISKHSFDTPL YRFNIPNLRV 240 GTLDSLLALS DDLLKSNSFV EGVSHKIRRQ IEDLEKLSGT ESSSLTVDGV PVDSYLTRFV 300 WDEAKYPTMS PLREIVDAIH TLVAKIEDDL KVRVAEYNNV RSQLNAINRK QSGSLAVRDL 360 SNLVKPEDII TSEHLVTLLA VVPKYSQKDW LASYETLTSY VVPRSTKQLY EDNEYALYTV 420 TLFGRVADNF RIAAREKGFQ IRDFEYSPEA QESRKQELER LVNDQESLKT SLLNWCYTSY 480 GEVFSSWMHF CAVRIFAESI LRYGLPPNFL ACVLAPPVKS EKKVRSILEG LSGSANSAYW 540 KSEDDVGGMA ALGGDADGHP YVSFTINLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1u7l_A | 3e-61 | 233 | 568 | 48 | 392 | Vacuolar ATP synthase subunit C |
3j9t_O | 3e-61 | 233 | 568 | 48 | 392 | V-type proton ATPase subunit C |
3j9u_O | 3e-61 | 233 | 568 | 48 | 392 | V-type proton ATPase subunit C |
3j9v_O | 3e-61 | 233 | 568 | 48 | 392 | V-type proton ATPase subunit C |
5vox_O | 3e-61 | 233 | 568 | 48 | 392 | V-type proton ATPase subunit C |
5voy_O | 3e-61 | 233 | 568 | 48 | 392 | V-type proton ATPase subunit C |
5voz_O | 3e-61 | 233 | 568 | 48 | 392 | V-type proton ATPase subunit C |
6o7v_O | 3e-61 | 233 | 568 | 48 | 392 | V-type proton ATPase subunit C |
6o7w_O | 3e-61 | 233 | 568 | 48 | 392 | V-type proton ATPase subunit C |
6o7x_O | 3e-61 | 233 | 568 | 48 | 392 | V-type proton ATPase subunit C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217037 | 4e-44 | AC217037.1 Populus trichocarpa clone POP049-G18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446960.1 | 0.0 | V-type proton ATPase subunit C | ||||
Refseq | XP_006446962.1 | 0.0 | V-type proton ATPase subunit C | ||||
Refseq | XP_006468875.1 | 0.0 | V-type proton ATPase subunit C | ||||
Refseq | XP_006468876.1 | 0.0 | V-type proton ATPase subunit C | ||||
Refseq | XP_006468877.1 | 0.0 | V-type proton ATPase subunit C | ||||
Swissprot | Q9SDS7 | 0.0 | VATC_ARATH; V-type proton ATPase subunit C | ||||
TrEMBL | A0A067E0G2 | 0.0 | A0A067E0G2_CITSI; V-type proton ATPase subunit C | ||||
TrEMBL | A0A2H5Q4L7 | 0.0 | A0A2H5Q4L7_CITUN; V-type proton ATPase subunit C | ||||
TrEMBL | V4U2W4 | 0.0 | V4U2W4_9ROSI; V-type proton ATPase subunit C | ||||
STRING | XP_006468875.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006446960.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 4e-75 | B3 family protein |
Publications ? help Back to Top | |||
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