PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2641_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ZF-HD
Protein Properties Length: 321aa    MW: 35462.2 Da    PI: 7.0491
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2641_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.14.4e-33140194459
    ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     rYkeC++NhAa++G+h+vDGCgEfmps geegt++alkCaAC+CHRnFHR+e++ 
  Neem_2641_f_1 140 SRYKECQRNHAATMGSHVVDGCGEFMPS-GEEGTSDALKCAACDCHRNFHRKETDG 194
                    59*************************9.999*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015662.6E-29141191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.1E-30141192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-20141194IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.294142191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.6E-29240314IPR009057Homeodomain-like
SuperFamilySSF466898.97E-19242313IPR009057Homeodomain-like
TIGRFAMsTIGR015654.2E-27252309IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MELSDQDNEI EGMTRSLGYT RDSSSKVSST PINSAVGETG RDQNTVHVDD ETIFDPSETL  60
DQQLLFHHQL NQDHNKPSGN RDINPDPVQV SIAPTRATGA KTQQQLQQAE GNINRSIQRS  120
SGAAPRQALP PSPTISSPLS RYKECQRNHA ATMGSHVVDG CGEFMPSGEE GTSDALKCAA  180
CDCHRNFHRK ETDGEPHYAL PNSPPTAAIA PMMMTFGGGG SSGGLDESSS EDLNMYQSSA  240
RGQTSGQPRL SKKRFRTKFT QEQKDRMLEF AEKLGWRIQR QDEPGVLEFC NQIGVKRQVF  300
KVWMHNNKQS SKKKEASVRI N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-232533101875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022740152.11e-100zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW77e-67ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLV4UHS42e-97V4UHS4_9ROSI; Uncharacterized protein
STRINGXP_006466804.13e-98(Citrus sinensis)
STRINGXP_006425664.13e-98(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-57homeobox protein 24