PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26037_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 177aa    MW: 19991.5 Da    PI: 5.3182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26037_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08149172629
                     HHHHHHHHHHHHHHHHHHHCTSCC CS
             HLH   6 nerErrRRdriNsafeeLrellPk 29 
                      ++ErrRR+r+N++++ Lr+++Pk
  Neem_26037_f_1 149 LMAERRRRKRLNDRLSMLRSIVPK 172
                     589********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.105143177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-7146174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-6149172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-6150173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQINNFPSGW NFDSLDENPS LVAASSNPSF LGFTAPPEPS FECPFSDQAY TFVDGLAIPE  60
IDTSSYACRN DTALYPSQAQ AQDYPSIVEE DGLGLLRTDC HHCFEERNTS CTVENMEQLK  120
NNIQVFNMGL CGEKKNKNKK LEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKVF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151158ERRRRKRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894162e-41KP689416.1 Prunus pseudocerasus isolate Unigene13488 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021274415.14e-59transcription factor bHLH93-like
TrEMBLA0A061DI022e-58A0A061DI02_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2
STRINGEOX918514e-58(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.24e-13beta HLH protein 93