PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_25937_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 28775.9 Da PI: 9.7142 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.6 | 2.9e-10 | 117 | 183 | 1 | 62 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvlt 62 f+k+l +sdv++ gr+v+pkkfae++ +++++++ + ++d + + W++k+++ ++++++y+++ Neem_25937_f_1 117 FEKQLQNSDVSSAGRIVIPKKFAETNlpILNEKGGFWMNFNDMDYpQIWTFKFRFwpNNRGRMYLFE 183 99**************************7778899*******6666*******99655555557765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-16 | 114 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.96E-11 | 115 | 243 | No hit | No description |
SuperFamily | SSF101936 | 1.12E-12 | 115 | 183 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0068 | 117 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-7 | 117 | 183 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVIISEFGDV VLTPGKPATG DQVNQGGGNR EPPAAGSSRN CEYRRRASRE PPAAGSSRNC 60 EYRRRASRRQ NHRFAPDNPL VFQHRLPRLP LQPPPAPPVR LYFSLQEINP FVMRFLFEKQ 120 LQNSDVSSAG RIVIPKKFAE TNLPILNEKG GFWMNFNDMD YPQIWTFKFR FWPNNRGRMY 180 LFENASGLKS PASSQSSTFL LLNAMQLICC FTENLPGEFT RKYCLELGDY LMVFKDDING 240 AYVSAIKYSC IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 3e-25 | 113 | 243 | 1 | 100 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 3e-25 | 113 | 243 | 1 | 100 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438851.2 | 9e-51 | uncharacterized protein LOC18043546 | ||||
Refseq | XP_015387151.1 | 9e-51 | uncharacterized protein LOC107177608 | ||||
TrEMBL | A0A2H5N9Q5 | 2e-52 | A0A2H5N9Q5_CITUN; Uncharacterized protein | ||||
STRING | XP_006438851.1 | 5e-50 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22753 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 7e-27 | B3 family protein |