PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_25879_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 212aa MW: 24988.2 Da PI: 7.5898 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.9 | 4.2e-32 | 12 | 134 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 +P+dee++ L+ k + + ++ ++i+evdiyk+eP dLp + ++ +e wyfF++ ky++++ nr t++gyWk t +d+++l+k ++++ Neem_25879_f_1 12 QPNDEEII-ALLNMKELDPDYSV-QIINEVDIYKLEPFDLPglSVIQWDELVWYFFCSPCCKYRNSQCVNRRTDEGYWKITSRDRKILAKhSTQV 104 7*******.88999999999999.89***************6336666777*************************************9966777 PP NAM 100 vglkktLvfy.kgrapkgektdWvmheyrl 128 +g+kk L+fy +g pk +ktdWvmhe++ Neem_25879_f_1 105 IGTKKYLTFYkHGYPPKEHKTDWVMHEFHS 134 9*********557999************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.817 | 5 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-15 | 11 | 133 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.05E-37 | 12 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MTLFNAVRLQ RQPNDEEIIA LLNMKELDPD YSVQIINEVD IYKLEPFDLP GLSVIQWDEL 60 VWYFFCSPCC KYRNSQCVNR RTDEGYWKIT SRDRKILAKH STQVIGTKKY LTFYKHGYPP 120 KEHKTDWVMH EFHSEYDPSY EKDFVICRIE KKTKNKSKSS TSYDGQSSID HLASNFRDQV 180 QISGHPHMTH DFGNNFAADT VSRVRMGTIY PQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-22 | 13 | 158 | 25 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-22 | 13 | 158 | 25 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-22 | 13 | 158 | 25 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-22 | 13 | 158 | 25 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-22 | 13 | 158 | 28 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-22 | 13 | 158 | 28 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-22 | 13 | 158 | 28 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-22 | 13 | 158 | 28 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-22 | 13 | 158 | 28 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-22 | 13 | 158 | 28 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-22 | 13 | 158 | 28 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-22 | 13 | 158 | 28 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-22 | 13 | 158 | 25 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-22 | 13 | 158 | 25 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387910.1 | 5e-47 | NAC domain-containing protein 89-like | ||||
Refseq | XP_015387911.1 | 5e-47 | NAC domain-containing protein 89-like | ||||
Refseq | XP_015387913.1 | 5e-47 | NAC domain-containing protein 89-like | ||||
Refseq | XP_024042301.1 | 5e-47 | NAC domain-containing protein 89-like | ||||
Refseq | XP_024956939.1 | 5e-47 | NAC domain-containing protein 89-like | ||||
Refseq | XP_024956940.1 | 5e-47 | NAC domain-containing protein 89-like | ||||
TrEMBL | A0A067DNM9 | 7e-46 | A0A067DNM9_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067E037 | 5e-46 | A0A067E037_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A1S8ACB0 | 3e-47 | A0A1S8ACB0_CITLI; NAC domain containing protein (Fragment) | ||||
STRING | XP_006485395.1 | 2e-46 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 5e-30 | NAC 014 |