PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_25695_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 159aa MW: 18009.2 Da PI: 9.9589 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5e-12 | 21 | 56 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +g WT+eEd++l+ +++++G W+tI++ g Rt++ Neem_25695_f_1 21 KGLWTPEEDQKLISYIQKHGIQKWSTIPKLAG--RTGN 56 678****************************8..9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.76E-11 | 14 | 57 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-14 | 15 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.342 | 16 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-4 | 20 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-9 | 21 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.42E-8 | 24 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MEETKKERMK KTGILETKLR KGLWTPEEDQ KLISYIQKHG IQKWSTIPKL AGRTGNNGIE 60 NFRRFGERKG LQGNRKDIKS IKVNESATPS FQESEYTTPN SDVEGSQSSS FHPNNYQVPL 120 QTTNTASLNS AQSSPFMDAL SGIFVFEFIS QFSSFIVNH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428204.1 | 5e-17 | calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A067ERP0 | 5e-16 | A0A067ERP0_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067EZ92 | 6e-16 | A0A067EZ92_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067F009 | 6e-16 | A0A067F009_CITSI; Uncharacterized protein | ||||
STRING | XP_006428204.1 | 2e-16 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 3e-13 | myb domain protein 50 |