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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_25595_f_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 289aa MW: 34249.2 Da PI: 4.3077 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 36 | 1.9e-11 | 62 | 146 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
Wt++e +L+e+ e+ +l+r++l+ +W evs+k+ ++ ++e++ qC++ ++ l+++y k+k ++ + s++++f++++
Neem_25595_f_1 62 WTEHEAFVLLEIWGERFLQLGRKSLRTEDWLEVSEKVtEALKVEKTEAQCRQMMDVLKRKYTKEKVKVEQM-GVNGSKWVFFKKMD 146
*************************************77899*********************99887776.445558*******8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 3.6E-17 | 61 | 148 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 289 aa Download sequence Send to blast |
MDDTEDDARY PPKSYSLNRQ KLPLYSRPIK NRFQYEEEDE DEEIDDHIEE LAPRSVKLSY 60 DWTEHEAFVL LEIWGERFLQ LGRKSLRTED WLEVSEKVTE ALKVEKTEAQ CRQMMDVLKR 120 KYTKEKVKVE QMGVNGSKWV FFKKMDMLMD MRKESGGLAC GIDSGEYVFM DTKVYLDRSN 180 GFDEMRDSPS ESEVEEEAEE KDNSEESLAS LRMLADSVNK FGEIYEKIEN SKREQMMELE 240 RMRMDFHREL ELQKKQILER AQVEIEKIRE GDDDRDTDGD GDSMENLSE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006451106.1 | 1e-138 | trihelix transcription factor ASIL1 | ||||
| TrEMBL | V4UPH6 | 1e-137 | V4UPH6_9ROSI; Uncharacterized protein | ||||
| STRING | XP_006451106.1 | 1e-138 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM9779 | 27 | 33 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G24490.1 | 2e-91 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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