PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25545_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 652aa MW: 70794.9 Da PI: 7.7567

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25545_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	55.1	1.5e-17	275	312	1	37
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+ Neem_25545_f_2 275 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQ 312 58*************************99****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-17	260	312	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-16	268	312	IPR003657	WRKY domain
PROSITE profile	PS50811	18.223	270	312	IPR003657	WRKY domain
SMART	SM00774	1.3E-14	275	334	IPR003657	WRKY domain
Pfam	PF03106	2.2E-15	276	312	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MEENRAAAME DIFRRSGRRV TVDVDEEKKA ADSAADPEEI VVKIGKKRLH NENNDTIPSS 60 PEQKHLSSGK QQLDLTNAKG SSLGPNSRPS SSSQKEQDDQ LESARAEMGE VRQENQRLKM 120 YLDRIMKDYQ TLQMQFINIV QQESKKSTDR SNDHEQEIEE PEFVSLSLGR FSSDSRKDDN 180 KNKTSSQGKE DEHDKEGLSL ALDCKFEASK SDANESLPNP SPAHSSEEPK DDTGQTWPPS 240 KVLKTIRSGD DEILQQSQVK KTRVSVRARC DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR 300 CTVAPSCPVR KQECFFGISG AKMCRRHVDL NHHLRRNPQP PTSCFRHGDG FHHFGSCDNH 360 PLPVSATAMA STTSAAASML LSGASSSSLP GSSAPSATIP GASNLHGLNF YMSDNSKSKQ 420 YYLPNSSLST SPSHSTITLD LTTNTPSSSS SHFSTFTSNF PPAPRYSSAN LNFSSSESSS 480 NLLWSNGLLS YSNSSTQPYI KNQIGSLNLG RQPLENVYQS FMQKNNPTLP EQSLPPDTIA 540 AATKAITADP SFQSALAAAL KSIIGTGNSG PGGTNQVSGD NFGQKVKWGE QFPAASSHSE 600 TVKGSGCGSS YLNKSSATNS QPGSLIFLPP SLPFSASKSA SASPSDNREH TN

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MEENRAAAME DIFRRSGRRV TVDVDEEKKA ADSAADPEEI VVKIGKKRLH NENNDTIPSS  60
PEQKHLSSGK QQLDLTNAKG SSLGPNSRPS SSSQKEQDDQ LESARAEMGE VRQENQRLKM  120
YLDRIMKDYQ TLQMQFINIV QQESKKSTDR SNDHEQEIEE PEFVSLSLGR FSSDSRKDDN  180
KNKTSSQGKE DEHDKEGLSL ALDCKFEASK SDANESLPNP SPAHSSEEPK DDTGQTWPPS  240
KVLKTIRSGD DEILQQSQVK KTRVSVRARC DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR  300
CTVAPSCPVR KQECFFGISG AKMCRRHVDL NHHLRRNPQP PTSCFRHGDG FHHFGSCDNH  360
PLPVSATAMA STTSAAASML LSGASSSSLP GSSAPSATIP GASNLHGLNF YMSDNSKSKQ  420
YYLPNSSLST SPSHSTITLD LTTNTPSSSS SHFSTFTSNF PPAPRYSSAN LNFSSSESSS  480
NLLWSNGLLS YSNSSTQPYI KNQIGSLNLG RQPLENVYQS FMQKNNPTLP EQSLPPDTIA  540
AATKAITADP SFQSALAAAL KSIIGTGNSG PGGTNQVSGD NFGQKVKWGE QFPAASSHSE  600
TVKGSGCGSS YLNKSSATNS QPGSLIFLPP SLPFSASKSA SASPSDNREH TN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007037253.2	0.0	PREDICTED: probable WRKY transcription factor 61
TrEMBL	A0A061G420	0.0	A0A061G420_THECC; WRKY DNA-binding protein 72, putative
STRING	EOY21754	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-49	WRKY DNA-binding protein 72