PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_25545_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 652aa MW: 70794.9 Da PI: 7.7567 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 55.1 | 1.5e-17 | 275 | 312 | 1 | 37 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+ Neem_25545_f_2 275 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQ 312 58***************************99******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-17 | 260 | 312 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-16 | 268 | 312 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.223 | 270 | 312 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-14 | 275 | 334 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-15 | 276 | 312 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MEENRAAAME DIFRRSGRRV TVDVDEEKKA ADSAADPEEI VVKIGKKRLH NENNDTIPSS 60 PEQKHLSSGK QQLDLTNAKG SSLGPNSRPS SSSQKEQDDQ LESARAEMGE VRQENQRLKM 120 YLDRIMKDYQ TLQMQFINIV QQESKKSTDR SNDHEQEIEE PEFVSLSLGR FSSDSRKDDN 180 KNKTSSQGKE DEHDKEGLSL ALDCKFEASK SDANESLPNP SPAHSSEEPK DDTGQTWPPS 240 KVLKTIRSGD DEILQQSQVK KTRVSVRARC DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR 300 CTVAPSCPVR KQECFFGISG AKMCRRHVDL NHHLRRNPQP PTSCFRHGDG FHHFGSCDNH 360 PLPVSATAMA STTSAAASML LSGASSSSLP GSSAPSATIP GASNLHGLNF YMSDNSKSKQ 420 YYLPNSSLST SPSHSTITLD LTTNTPSSSS SHFSTFTSNF PPAPRYSSAN LNFSSSESSS 480 NLLWSNGLLS YSNSSTQPYI KNQIGSLNLG RQPLENVYQS FMQKNNPTLP EQSLPPDTIA 540 AATKAITADP SFQSALAAAL KSIIGTGNSG PGGTNQVSGD NFGQKVKWGE QFPAASSHSE 600 TVKGSGCGSS YLNKSSATNS QPGSLIFLPP SLPFSASKSA SASPSDNREH TN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007037253.2 | 0.0 | PREDICTED: probable WRKY transcription factor 61 | ||||
TrEMBL | A0A061G420 | 0.0 | A0A061G420_THECC; WRKY DNA-binding protein 72, putative | ||||
STRING | EOY21754 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 2e-49 | WRKY DNA-binding protein 72 |