PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25355_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ARR-B

Protein Properties

Length: 201aa MW: 22869.2 Da PI: 6.5099

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25355_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	67.4	2.4e-21	128	177	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQ Neem_25355_f_1 128 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQ 177 68*****************.9************************** PP
2	Response_reg	34.1	1.4e-12	1	56	53	109
CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 mp+mdG++ll++ e +lp+i+++ ge + + + ++ Ga d+l Kp+ ++el++ Neem_25355_f_1 1 MPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 56 9**********6644.8*********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	6.26E-16	1	71	IPR011006	CheY-like superfamily
CDD	cd00156	2.68E-12	1	62	No hit	No description
PROSITE profile	PS50110	23.653	1	62	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.6E-9	1	57	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	2.1E-21	1	69	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-23	126	177	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-14	126	179	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-19	128	178	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-6	130	177	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MPDMDGFKLL EHVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH 60 VFRKRIHEVR DIENIEGFES IQMTRSGSDQ SDDGHFLPGE DLTFARKRKD AESKHDDKDS 120 GDASSTKKAR VVWSVDLHQK FVKAVNQIGF DKVGPKKILD LMNVPWLTRE NVASHLQIIT 180 FHLLLDSCAI HGDMSCENNV G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	2e-15	124	177	1	54	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438147.1	1e-114	two-component response regulator ARR11 isoform X1
Refseq	XP_006484016.1	1e-114	two-component response regulator ARR11 isoform X1
Refseq	XP_006484017.1	1e-114	two-component response regulator ARR11 isoform X2
Refseq	XP_024041181.1	1e-115	two-component response regulator ARR11 isoform X2
Refseq	XP_024041182.1	1e-115	two-component response regulator ARR11 isoform X3
Swissprot	Q5N6V8	9e-87	ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBL	A0A2H5NV41	1e-113	A0A2H5NV41_CITUN; Uncharacterized protein
TrEMBL	V4TDL1	1e-113	V4TDL1_9ROSI; Uncharacterized protein
STRING	XP_006484017.1	1e-114	(Citrus sinensis)
STRING	XP_006438147.1	1e-114	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8066	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	2e-77	response regulator 11

Publications ? help Back to Top
Du L, et al. The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction. Genomics, 2007. 89(6): p. 697-707 [PMID:17408920]