PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2534_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB

Protein Properties

Length: 412aa MW: 44208.6 Da PI: 6.2548

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2534_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.6e-16	60	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Neem_2534_f_3 60 KGPWSPEEDAILSELVGKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 105 79****************************.*********985 PP
2	Myb_DNA-binding	56.9	4.7e-18	112	156	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v+a++ +G++ W+ Iar ++ gRt++ +k++w++ Neem_2534_f_3 112 RKPFTDEEDRIIVKAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 156 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.696	55	106	IPR017930	Myb domain
SuperFamily	SSF46689	2.47E-30	57	153	IPR009057	Homeodomain-like
SMART	SM00717	9.5E-15	59	108	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-15	60	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-25	61	113	IPR009057	Homeodomain-like
CDD	cd00167	6.92E-14	62	104	No hit	No description
PROSITE profile	PS51294	26.61	107	161	IPR017930	Myb domain
SMART	SM00717	4.0E-17	111	159	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-15	112	156	IPR001005	SANT/Myb domain
CDD	cd00167	5.95E-13	114	157	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.7E-24	114	160	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MEPETKTEKA EATAIEIDGA DAGDGGEAAT EGADDGGGSG DDSVLVVREG SRKGGKSRVK 60 GPWSPEEDAI LSELVGKFGA RNWSLIARGI AGRSGKSCRL RWCNQLDPAV KRKPFTDEED 120 RIIVKAHAVH GNKWAVIARL LPGRTDNAIK NHWNSTLRRR TMETDRIKKL GSVNMMEDTS 180 MDKTRASSEE TLSCGDVNSL KSLEGKDVSS LENLDNHYED KSLTEVPSSH EAKEPPTLFR 240 PVARVSAFSV YNTRDVPHVA SMHLRPTPLQ GPLVQASMPD AGTCKLLEGV YGERMVPHWC 300 GYGCCGTQGG GNCLNSLLGP EFVDFSEPPT FPSYELAAIA TDISNLAWLK SGLENSSVRV 360 MGDVAGRIKT NGSQMQMGDA AGRSVSNGLQ MPMSSTSGIS PNIPHAQTVL KG

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MEPETKTEKA EATAIEIDGA DAGDGGEAAT EGADDGGGSG DDSVLVVREG SRKGGKSRVK  60
GPWSPEEDAI LSELVGKFGA RNWSLIARGI AGRSGKSCRL RWCNQLDPAV KRKPFTDEED  120
RIIVKAHAVH GNKWAVIARL LPGRTDNAIK NHWNSTLRRR TMETDRIKKL GSVNMMEDTS  180
MDKTRASSEE TLSCGDVNSL KSLEGKDVSS LENLDNHYED KSLTEVPSSH EAKEPPTLFR  240
PVARVSAFSV YNTRDVPHVA SMHLRPTPLQ GPLVQASMPD AGTCKLLEGV YGERMVPHWC  300
GYGCCGTQGG GNCLNSLLGP EFVDFSEPPT FPSYELAAIA TDISNLAWLK SGLENSSVRV  360
MGDVAGRIKT NGSQMQMGDA AGRSVSNGLQ MPMSSTSGIS PNIPHAQTVL KG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-41	59	160	6	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006429252.1	0.0	transcription factor MYB1
Swissprot	Q42575	1e-112	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A2H5PBU0	0.0	A0A2H5PBU0_CITUN; Uncharacterized protein
STRING	XP_006429252.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-102	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]