PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25320_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 474aa MW: 54540.8 Da PI: 6.5941

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25320_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	305.2	1.6e-93	94	471	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl A+av++++ la L +l +++ +gd++qR++ayf+ +Laarl+ s y+ + ++t+ +ee+ a++ ++ vsP+++f+h Neem_25320_f_1 94 LIHLLLITATAVDNNSVDLALDNLIELYQNVCLTGDSVQRVVAYFADGLAARLLTRKSPFYEMIMKEPTD----EEEFLAFTDLYRVSPYFQFAH 184 689**************************************************999999988888886....677788889******** PP GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182 +taNqaI+ea+e+e + +H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ s eel+et++rL +f + + ++ fef+ l Neem_25320_f_1 185 FTANQAIVEAFEREeddnnRSLHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGR----SIEELQETENRLVSFSKGFrNLVFEFQGL- 274 ********9988887899******************99755566*****....9************9758***7. PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 + + +l +Lr k++E++aVnlv++l +l +vs +e+L+ v sl+P +v++veq+ ++ ++Fl rf+e+l+y++a+fdsl+ lp+ Neem_25320_f_1 275 ---MRSSKLINLRKKKNETVAVNLVFHLNTLN--NVSK---VSETLNSVHSLKPSIVILVEQDGGRSPKNFLSRFMESLHYFAAMFDSLDDCLPQ 361 ...556666799************9997..4444...4489********************************************** PP GRAS 278 eseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kv..k.sdgyrveee.sgslv 359 es er ++E+ lg+ei++++ + +++ r e++e W+ +e+ GF +++s+k qaklll+ ++ + ++g++v e+ +g ++ Neem_25320_f_1 362 ESTERLSIEKNHLGKEIKSMLNNDKENgNYPRYEKMEIWKGSMENHGFAGIKMSSKSLIQAKLLLKirthycplQFdgEnNNGFKVFERdEGRAI 456 *******************99987889*****************************9743332222112222567888765356666 PP GRAS 360 .lgWkdrpLvsvSaW 373 lgW+dr L+++SaW Neem_25320_f_1 457 sLGWQDRCLLTASAW 471 7************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.861	68	439	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.6E-91	94	471	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MEDITVDEEE FLNLSLSLAI VADSCANNNN RKRKRNRVPF DPLNHHGHHQ EHQGCEGKIF 60 RLLQMREQML RLDNHHQRNK EAVHQHEDGK GLHLIHLLLI TATAVDNNSV DLALDNLIEL 120 YQNVCLTGDS VQRVVAYFAD GLAARLLTRK SPFYEMIMKE PTDEEEFLAF TDLYRVSPYF 180 QFAHFTANQA IVEAFEREED DNNRSLHVID FDVSYGFQWP SLIQSLSEKA TSGNRISLRI 240 TGFGRSIEEL QETENRLVSF SKGFRNLVFE FQGLMRSSKL INLRKKKNET VAVNLVFHLN 300 TLNNVSKVSE TLNSVHSLKP SIVILVEQDG GRSPKNFLSR FMESLHYFAA MFDSLDDCLP 360 QESTERLSIE KNHLGKEIKS MLNNDKENGN YPRYEKMEIW KGSMENHGFA GIKMSSKSLI 420 QAKLLLKIRT HYCPLQFDGE NNNGFKVFER DEGRAISLGW QDRCLLTASA WHCV

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MEDITVDEEE FLNLSLSLAI VADSCANNNN RKRKRNRVPF DPLNHHGHHQ EHQGCEGKIF  60
RLLQMREQML RLDNHHQRNK EAVHQHEDGK GLHLIHLLLI TATAVDNNSV DLALDNLIEL  120
YQNVCLTGDS VQRVVAYFAD GLAARLLTRK SPFYEMIMKE PTDEEEFLAF TDLYRVSPYF  180
QFAHFTANQA IVEAFEREED DNNRSLHVID FDVSYGFQWP SLIQSLSEKA TSGNRISLRI  240
TGFGRSIEEL QETENRLVSF SKGFRNLVFE FQGLMRSSKL INLRKKKNET VAVNLVFHLN  300
TLNNVSKVSE TLNSVHSLKP SIVILVEQDG GRSPKNFLSR FMESLHYFAA MFDSLDDCLP  360
QESTERLSIE KNHLGKEIKS MLNNDKENGN YPRYEKMEIW KGSMENHGFA GIKMSSKSLI  420
QAKLLLKIRT HYCPLQFDGE NNNGFKVFER DEGRAISLGW QDRCLLTASA WHCV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-57	78	471	3	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007199010.2	0.0	scarecrow-like protein 21
TrEMBL	M5VGL5	0.0	M5VGL5_PRUPE; Uncharacterized protein
STRING	EMJ00209	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15761	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	3e-57	GRAS family protein