PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_25293_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 414aa MW: 46528 Da PI: 8.9607 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.2 | 1.8e-24 | 123 | 223 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++ Neem_25293_f_1 123 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLAAGDTFVFL--RGENG 215 99****************************9445555669************************************************..44999 PP ..EEEEE- CS B3 91 elvvkvfr 98 el+v v+r Neem_25293_f_1 216 ELRVAVRR 223 99**9997 PP | |||||||
2 | Auxin_resp | 107.1 | 2e-35 | 249 | 328 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F v+Y+Pr+ s+F++ ++k+++a+++k++vGmR+km+fe+eds+err+sGt+vgv+d++p +W++SkWrsLk Neem_25293_f_1 249 ASHAVATQTMFVVYYKPRT--SQFIIGLNKYLEAVNNKFTVGMRYKMRFEGEDSPERRFSGTIVGVEDFSP-HWQDSKWRSLK 328 789***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-41 | 114 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.11E-38 | 116 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.79E-21 | 121 | 223 | No hit | No description |
SMART | SM01019 | 2.1E-22 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-22 | 123 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.576 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-32 | 249 | 328 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MANRVGSLSQ PCSSSDDLYV ELWKACAGPL VDVPKQGERV YYFPQGHMEQ LEASTNQELN 60 QRIPLFHLPS KILCRVIHIQ LLAEQETDEV YAQITLLPEP SQQEPTTPDP CPSESPRPTL 120 RSFCKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR 180 GQPRRHLLTT GWSTFVTSKR LAAGDTFVFL RGENGELRVA VRRLAHQQSS MPSSVISSQS 240 MHLGVLATAS HAVATQTMFV VYYKPRTSQF IIGLNKYLEA VNNKFTVGMR YKMRFEGEDS 300 PERRFSGTIV GVEDFSPHWQ DSKWRSLKVQ WDEPASITRP DRVSPWDLEP FVASAASNLV 360 QPVLAKNKRA PDRVSPWDLE PFVASAASNL VQPVLAKNKR ARPAIELPAV GIRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 15 | 357 | 16 | 361 | Auxin response factor 1 |
4ldw_A | 1e-177 | 15 | 357 | 16 | 361 | Auxin response factor 1 |
4ldw_B | 1e-177 | 15 | 357 | 16 | 361 | Auxin response factor 1 |
4ldx_A | 1e-177 | 15 | 357 | 16 | 361 | Auxin response factor 1 |
4ldx_B | 1e-177 | 15 | 357 | 16 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439306.1 | 0.0 | auxin response factor 9 isoform X2 | ||||
Refseq | XP_006476351.1 | 0.0 | auxin response factor 9 isoform X2 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | V4TRL7 | 0.0 | V4TRL7_9ROSI; Auxin response factor | ||||
STRING | XP_006439306.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |