PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25247_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 205aa MW: 23146.6 Da PI: 9.7613

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25247_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ F++ L H+++H Neem_25247_f_2 40 YNCSFCKREFKSAQALGGHMNVH 62 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.56E-6	37	66	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.9E-4	38	65	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	4.8E-7	40	63	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0085	40	62	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.115	40	67	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEKTYMMVSS NKFKEKWDYE KFSFEGDHSS CGLTWPPKNY NCSFCKREFK SAQALGGHMN 60 VHRRDRARLR LLPPQVLEYR NPNPSFSSSS ISSPPSNKHL LPYTPKSLLS PIITSFSASS 120 SALSNDEKKR LLECPGEDAF STLPCGGITK KKMTRAAFGA GELKGYAKKC ELQSLKKRNV 180 ISLDLEMGLK DTKDVLDLEL RLGYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	3e-12	35	62	2	29	superman protein
2l1o_A	3e-12	35	62	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015386218.2	4e-60	zinc finger protein 11
TrEMBL	A0A2H5QGT2	2e-55	A0A2H5QGT2_CITUN; Uncharacterized protein
TrEMBL	V4VV39	1e-58	V4VV39_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006443884.1	2e-59	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9575	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42410.1	8e-17	zinc finger protein 11