PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_25229_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | CPP | ||||||||
Protein Properties | Length: 300aa MW: 32808.1 Da PI: 8.5326 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.1 | 4.9e-15 | 105 | 144 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e+ Neem_25229_f_1 105 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCHNNVEN 144 89**************************.********9875 PP | |||||||
2 | TCR | 52.2 | 1.2e-16 | 189 | 228 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Neem_25229_f_1 189 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 228 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.1E-17 | 104 | 144 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.605 | 105 | 229 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.8E-12 | 106 | 141 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 189 | 230 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.7E-13 | 192 | 227 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGEGEGGEFP PRKAQSESSG EYPAKKLARQ LDFTGSFVSN VVLPEHPQSL AMPANTQSQP 60 QLKSVVPPVP PPPAATQPPV RVPKPESPKS RSRPNIEVKD STPKKQKQCN CKHSRCLKLY 120 CECFASGIYC DGCNCVNCHN NVENEAARRE AVEATLERNP NAFRPKIASS PHGTRDNREE 180 TGEFLMLGKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK CMDCKNFEGS EERQALFHGD 240 HANNMAYIQQ AANAAITGAI GSSGYASPPV SKKRKGQELF FGSTAKDPSI QRHGHFPQAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-34 | 97 | 238 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 3e-34 | 97 | 238 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451190.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Refseq | XP_006475649.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Swissprot | Q9SZD1 | 1e-136 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | V4UJK8 | 0.0 | V4UJK8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006475649.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006451190.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-107 | Tesmin/TSO1-like CXC domain-containing protein |