PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2496_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 487aa    MW: 51235.2 Da    PI: 8.1605
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2496_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.3e-124974227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   +++ C +++rtG+C yG+rC+F+H++
  Neem_2496_f_3 49 DEADCIHYLRTGFCGYGSRCRFNHPR 74
                   6799********************96 PP
2zf-CCCH37.92.9e-1295120227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C++++rtG Ck+G++Ck++H++
  Neem_2496_f_3  95 GQPICQYYLRTGACKFGASCKYHHPR 120
                    689*********************96 PP
3zf-CCCH40.25.8e-13141166227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+++++tG+Ck+G++CkF+H++
  Neem_2496_f_3 141 GEKECSYYMKTGQCKFGATCKFHHPQ 166
                    7899********************97 PP
4zf-CCCH36.57.9e-12308334127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+++++tG C++G++C+++H++
  Neem_2496_f_3 308 PGQPECQYYMKTGDCRFGSSCRYHHPR 334
                    5789*********************96 PP
5zf-CCCH32.91.1e-10356380327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++C ++a+ G Ck+G+ CkF H++
  Neem_2496_f_3 356 AAPCTHYAQRGVCKFGPACKFDHPM 380
                    589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2864775IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-44774IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-94974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.92993121IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-793120IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-597120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-598118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328139167IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6140167IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145307335IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6307334IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5313335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408353381IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6353380IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8356380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5356383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4358378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MERYGRVSGG SQSDPSLEWT APGTETGLEE PMWQLGLGAG VESYPERPDE ADCIHYLRTG  60
FCGYGSRCRF NHPRDRGMVI GAPRAGGGEF PEREGQPICQ YYLRTGACKF GASCKYHHPR  120
LGAGSVSNVS LNYYGYPMRP GEKECSYYMK TGQCKFGATC KFHHPQPAGV QAPTPSPAPQ  180
VAALHTPVPV APLYPTVQSP SAHSTQQYGL VVARPPLFPS SYVQGPYGPV LVSPGMVPVQ  240
GWNPYQASVN PISSPGAGTQ STVGSSSIYG LTQLSASAPA YTGTYQPIPS SVGPSSSSQK  300
ELPFPERPGQ PECQYYMKTG DCRFGSSCRY HHPRELIVPK TDVALSPLGL PLRPGAAPCT  360
HYAQRGVCKF GPACKFDHPM GTLSYSPSAS SLADMPVAPY PVGSSIGTLA PSSSSSDLRP  420
ELISGSSKDS VATRMSSSVS TSSGSVGAIL SKSGPVPHSS MQQSGQSSGP STADSSNSSN  480
AETHTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419655.10.0zinc finger CCCH domain-containing protein 58 isoform X1
RefseqXP_006489144.10.0zinc finger CCCH domain-containing protein 58 isoform X1
SwissprotQ6NPN31e-171C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLV4S2D80.0V4S2D8_9ROSI; Uncharacterized protein
STRINGXP_006489144.10.0(Citrus sinensis)
STRINGXP_006419655.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-158C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]