PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_24960_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 38565.8 Da PI: 8.1237 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.4 | 1.4e-53 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+++yL+kkv+ +k+++ evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + Neem_24960_f_1 8 VPPGFRFHPTDEELLHYYLRKKVSFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI 101 69****************************.99**************963433332556************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfy+grap+g+ktdW+mheyrle Neem_24960_f_1 102 RN-SYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 *9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-55 | 6 | 143 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.707 | 8 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MASSSGGVPP GFRFHPTDEE LLHYYLRKKV SFQKFDMEVI REVDLNKMEP WELQERCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DSQANLSTGF QEEKPIQNRT RPPLFHTHHH HHQQQQHQQF 180 NNLNHRNSSS SSSAFMQREN QFLLRHHQPP FELNNKPELA LHYSSTPHQI PATPQYSLFQ 240 PQNLLPNYPT ALPSTAADDS PASMVKQLMS NPSRDCDSAG SESLRYHPHH HHHHHEPGLE 300 VGTCEPMVAA AGGREDQGLN DWTMLVSEDT GKGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-47 | 2 | 136 | 9 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006441801.1 | 1e-163 | protein BEARSKIN2 | ||||
Refseq | XP_024954281.1 | 1e-163 | protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 1e-110 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A2H5Q8B2 | 1e-161 | A0A2H5Q8B2_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TYM9 | 1e-161 | V4TYM9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006478356.1 | 1e-162 | (Citrus sinensis) | ||||
STRING | XP_006441801.1 | 1e-162 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5213 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-113 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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