PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2491_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 372aa MW: 40917.1 Da PI: 8.6119

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2491_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.8	8.8e-32	201	256	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+e mkv+gLt+++vkSHLQkYRl+ Neem_2491_f_1 201 KQRRCWSPELHRRFLHALQQLGGSHAATPKQIREQMKVDGLTNDEVKSHLQKYRLH 256 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-28	198	259	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-17	198	259	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.887	198	258	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.4E-27	201	256	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	203	254	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDYAEKMQRC HEYVEALEEE KRKIQVFQRE LPLSIEACRR ELSGTTTEYM HGQSECSEQT 60 SSDVPVLEEF MPIKRSSSSE DNDEQHSHKN TTSNREKNSD KKKSDWLRSV QLWNQSPDPL 120 PKEDVPRKTT VVEVKRNNGG AFQPFQREKS VGKTEQSAGK VNSSLPAPAA SSTTETVTKG 180 GGGGGSGSSK KDEKEGQTQR KQRRCWSPEL HRRFLHALQQ LGGSHAATPK QIREQMKVDG 240 LTNDEVKSHL QKYRLHTRRP TPSIHGNSNP QAPQFVVVGG IWVQPPEYAT VTAKSSAEAS 300 TMTAANGIYA PLAAPPPALT QSSSPMQRPQ QAQSDHLQSE ERGSHSEGGG AHHSNSPATS 360 SSTHTTTASP AF

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDYAEKMQRC HEYVEALEEE KRKIQVFQRE LPLSIEACRR ELSGTTTEYM HGQSECSEQT  60
SSDVPVLEEF MPIKRSSSSE DNDEQHSHKN TTSNREKNSD KKKSDWLRSV QLWNQSPDPL  120
PKEDVPRKTT VVEVKRNNGG AFQPFQREKS VGKTEQSAGK VNSSLPAPAA SSTTETVTKG  180
GGGGGSGSSK KDEKEGQTQR KQRRCWSPEL HRRFLHALQQ LGGSHAATPK QIREQMKVDG  240
LTNDEVKSHL QKYRLHTRRP TPSIHGNSNP QAPQFVVVGG IWVQPPEYAT VTAKSSAEAS  300
TMTAANGIYA PLAAPPPALT QSSSPMQRPQ QAQSDHLQSE ERGSHSEGGG AHHSNSPATS  360
SSTHTTTASP AF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437730.1	1e-173	transcription factor HHO3
Swissprot	Q9FPE8	1e-111	HHO3_ARATH; Transcription factor HHO3
TrEMBL	V4TH64	1e-171	V4TH64_9ROSI; Uncharacterized protein
STRING	XP_006437730.1	1e-172	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-103	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]