PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24832_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 320aa    MW: 35877.2 Da    PI: 6.304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24832_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.3e-08135200755
                     HHHHHHHHHHHHHHHHHHCTSCCC....................TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkas.................kapskKlsKaeiLekAveYIksLq 55 
                     + Er+RR r+++++  Lr l+P+ +                  + +  ++Ka+i   Av Y++  q
  Neem_24832_f_1 135 ISERKRRGRMKEKLYALRALVPNVTkmdkmgarafntsytliCEINVQMDKASIIGDAVSYVQGQQ 200
                     78*********************555****************99*****************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-11126215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.792128199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-7130200No hitNo description
Gene3DG3DSA:4.10.280.109.2E-13130217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-8134207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-5134199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDAFGNLLVR NNDSEVLDFI DHPNFDQFVD RFRGENEDTL LPNFDCRMIS GCCDDNQFGS  60
ESTPDDDTFG FNGPSTTMSD LSFVLNSSFS SLNENVNGVD GERDNDGDHC SGTTRTTKTT  120
KNNRQSKADR SKTLISERKR RGRMKEKLYA LRALVPNVTK MDKMGARAFN TSYTLICEIN  180
VQMDKASIIG DAVSYVQGQQ MKAKKLKAEI AGLEASLTGS QNNQQSIENT RKTQVRSNNQ  240
SIYKKILLQV HPDNNTIYMQ IKMDIVQVEE RGFYLKLVCN KGEGVAVSLY KALESLTSFD  300
VRNTTLATES ERIALAFTLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488632.12e-97transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A2H5Q2554e-96A0A2H5Q255_CITUN; Uncharacterized protein
STRINGXP_006488632.17e-97(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.15e-63FER-like regulator of iron uptake