PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_24733_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 502aa MW: 55170.6 Da PI: 8.1511 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.6 | 7.3e-40 | 144 | 204 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s Neem_24733_f_1 144 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSTS 204 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 141 | 201 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-32 | 146 | 202 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.947 | 148 | 202 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 150 | 186 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MSEFKDSAIK LFGKTIPLSV VNYQQPQQQE ILSNEHQSSS ADDHGSFDRN PETSQREDNS 60 NKELQEQQDE EQKEHSGKQI IEYKQDDGSS KQITEELKDP TTSSGNTDHP KTPPIDGETS 120 SLKSSKNAEQ SETSTSQEKP LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR 180 YWTAGGTMRN VPVGAGRRKN KSTSVSHFRQ IMISEALRSG HTNVPNGIHN PSFGNNGTVL 240 TFGSDSPLCE SVASVLNLTD KTQNRMRNGF HGPEQRNLPS HGGRSNGDDH SSGSSITAAN 300 SSEKGGNSAS QDVRIKNYQG SAPRVPYFPG PPWPYPWNTA MPPPPAFYPP GFPVSFYPET 360 TYWGCAIPGP WNMPCVSPNS SSLSQCAPSS TPATPSLGKH SRDGNIISST KSEKEEPSRG 420 SNNSERSVLV PKTLRIDDPS EAAKSSIWAT LGIKNEKTNS GEGLFKGFQS KRDDRNYTAE 480 TSAVLQANPA ALSRSLNFRE KT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006483138.1 | 0.0 | cyclic dof factor 3-like | ||||
TrEMBL | A0A2H5N8X6 | 0.0 | A0A2H5N8X6_CITUN; Uncharacterized protein | ||||
STRING | XP_006483138.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5441 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 2e-83 | cycling DOF factor 3 |