PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_2460_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 220aa MW: 25315.7 Da PI: 10.0832 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54 | 4.6e-17 | 31 | 122 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +L++a ++ +l+rg+l++++W++v++++ ++++ +r+ +qCk++++ ++k+yk +k++ + + + +s++p+f++++a Neem_2460_f_3 31 CWSEEATSTLVDAWGRRYMELNRGNLRQKDWQDVADAVnalhaHSKKTHRTDVQCKNRIDTIKKKYKIEKARVASSNGTLTSSWPFFERMDA 122 7*****************************************999****************************999888899********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.6E-27 | 29 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MGDLTESLTP STATPTNTTP YSRPLPVRED CWSEEATSTL VDAWGRRYME LNRGNLRQKD 60 WQDVADAVNA LHAHSKKTHR TDVQCKNRID TIKKKYKIEK ARVASSNGTL TSSWPFFERM 120 DALIGNNVKP STNFSPKLSQ SPPVAVPLAY RKSVSAIERF GEVYERVEAE KLRQMVELEK 180 QRMQFASDLE MQRLRMFTEM QVQLERNKRN KRSGSNGERC |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449505.1 | 9e-94 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_006467646.1 | 9e-94 | trihelix transcription factor ASIL2 isoform X2 | ||||
TrEMBL | A0A2P5QSH0 | 1e-107 | A0A2P5QSH0_GOSBA; Uncharacterized protein | ||||
STRING | cassava4.1_013095m | 3e-95 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05550.1 | 2e-50 | sequence-specific DNA binding transcription factors |