PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24521_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 294aa    MW: 34525.2 Da    PI: 6.7628
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24521_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.11e-24151451128
             NAM   1 lppGfr..FhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     lppG++  F+Ptd++++ +yL +kv +k+l+  + + e+diy+ +e w+     + +e+ +yfF+k +kk+++g+r +r+tk g+W+++ kd+++
  Neem_24521_f_3  15 LPPGCKiiFDPTDQQIILDYLLNKVLHKPLPS-DWVIECDIYSdCEIWKKL-FQERRENTLYFFTKLKKKSERGSRFERVTKCGTWRSQ-KDTKI 106
                     68888777***********************9.788999999636777643.234467789**************************87.56777 PP

             NAM  93 lsk..kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                     +++  +++++g +++++f  k+   k ++ +W+mhe+rl
  Neem_24521_f_3 107 YCHgrERKHIGSRRSFTFVwKKGVDKDKRVQWIMHEFRL 145
                     776567778*********96555566689********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-276166IPR003441NAC domain
PROSITE profilePS5100527.33817166IPR003441NAC domain
PfamPF023657.8E-1618145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MYLVYSQQSA MQAALPPGCK IIFDPTDQQI ILDYLLNKVL HKPLPSDWVI ECDIYSDCEI  60
WKKLFQERRE NTLYFFTKLK KKSERGSRFE RVTKCGTWRS QKDTKIYCHG RERKHIGSRR  120
SFTFVWKKGV DKDKRVQWIM HEFRLDGCLR NNNCSDDYVI CRIKRKEKIK EDDDEEVMAS  180
CSSSDIIRGF QENNMSTVEL SNSVWNTARR FQNVVPTEVA NIGINGEGLL YSEEIHHSNL  240
CLSLKDLQDD YYEVDKFLLP NAQVERPVNI VEVQSNTTPA DWKTSEDLEK ILLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-171216714166NO APICAL MERISTEM PROTEIN
1ut4_B4e-171216714166NO APICAL MERISTEM PROTEIN
1ut7_A4e-171216714166NO APICAL MERISTEM PROTEIN
1ut7_B4e-171216714166NO APICAL MERISTEM PROTEIN
3swm_A5e-171216717169NAC domain-containing protein 19
3swm_B5e-171216717169NAC domain-containing protein 19
3swm_C5e-171216717169NAC domain-containing protein 19
3swm_D5e-171216717169NAC domain-containing protein 19
3swp_A5e-171216717169NAC domain-containing protein 19
3swp_B5e-171216717169NAC domain-containing protein 19
3swp_C5e-171216717169NAC domain-containing protein 19
3swp_D5e-171216717169NAC domain-containing protein 19
4dul_A4e-171216714166NAC domain-containing protein 19
4dul_B4e-171216714166NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2006036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.12e-18NAC domain containing protein 80