PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_24496_a_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SRS

Protein Properties

Length: 102aa MW: 11179.5 Da PI: 5.6796

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_24496_a_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	69.4	1.2e-21	10	63	101	154
DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++slP +v+++a frc+rv+++ d+e+e++Y ++v+i+GhvfkG+Lyd+G +e Neem_24496_a_1 10 FKKSLPGQVQAAANFRCIRVTAITDDEAEVGYVATVNISGHVFKGYLYDHGYDE 63 4567***********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.9E-19	8	62	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	2.8E-23	14	60	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MIDFRMKESF KKSLPGQVQA AANFRCIRVT AITDDEAEVG YVATVNISGH VFKGYLYDHG 60 YDEKKLFPCI SGMQMENDVS TARTRDSSSP VGDQSGYAAS GN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020409.1	4e-34	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q9M2U4	3e-19	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	B9GWY7	3e-32	B9GWY7_POPTR; Uncharacterized protein
STRING	POPTR_0003s19550.1	5e-33	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	1e-21	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]