PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_24347_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 278aa MW: 30526.5 Da PI: 4.4635

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_24347_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	6.1e-08	14	46	1	32
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W++eEd +l+d++++ G+g +W + ++++g Neem_24347_f_1 14 KGPWSPEEDAKLKDYIEKQGTGgNWIALPQKIG 46 79***********************99999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-9	5	44	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.01E-5	8	45	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.76	9	50	IPR017877	Myb-like domain
Pfam	PF00249	3.6E-6	14	46	IPR001005	SANT/Myb domain
CDD	cd00167	0.00372	16	40	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE KQGTGGNWIA LPQKIGKDSN GANLGEDGQY 60 SQGFSNSAIE RLQLHMQLQS LQNPLSFYNS PALWPKLHPL QEKMLQNLQS LNQGQNSIMQ 120 NVVPGSQLGH EQNVDNFPGQ STAPSTFPHN YQPISNSKVQ EFGNSLNGIS SSDSSIPVNP 180 VPKANGIEQS NAANQEFSTF QAELESFLNN KGVGFTAQED HQIGEFDCFN ATMNGSKDSL 240 IWWANEFDSK SASSNSWDST PALQSEGMFQ DFELGYNL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453430.1	2e-91	transcription factor MYB36
Refseq	XP_006474624.1	2e-91	transcription factor MYB36
TrEMBL	B9SJP4	1e-105	B9SJP4_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002526213.1	1e-106	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	5e-26	MYB family protein