PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_24282_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Nin-like | ||||||||
Protein Properties | Length: 302aa MW: 34717.2 Da PI: 5.5345 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.7 | 1.5e-25 | 149 | 199 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s +++s+yF+++i++AAkeL+v++T+LK++CR++GI+RWP+Rk+ sl Neem_24282_f_2 149 SKTLSRKTISQYFYMTITKAAKELNVGVTLLKKRCRELGIRRWPQRKLMSL 199 689*********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.097 | 131 | 221 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.2E-21 | 152 | 199 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGSLQACNKF ELLPKEEDPF SFLTQFPSLD FGENGFSSMD NWQNEMSLQE SCFDAIPLME 60 SFPDPLYTSI HDSQDNIVPF PKVTTSQGND EKYGSGIWNE LGPLFEPEKH SPQTLMCKNI 120 ADAFKETREL DINAIGRRRK SEEKTNNSSK TLSRKTISQY FYMTITKAAK ELNVGVTLLK 180 KRCRELGIRR WPQRKLMSLQ NLIRNVQELE RGGDIPGSEG KLKEAIEILE RERELIEEIP 240 DLEMEDKTKR LRQACFKANY KKRKLSEMMN NDHDHDQQLL SSTATSSCYS SGDHGYGEMK 300 SM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024042709.1 | 2e-95 | protein RKD1-like | ||||
TrEMBL | B9RLY3 | 1e-81 | B9RLY3_RICCO; Transcription factor, putative | ||||
STRING | XP_002514752.1 | 2e-82 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 2e-43 | RWP-RK domain-containing protein |