PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_24181_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GRAS | ||||||||
Protein Properties | Length: 233aa MW: 25859.2 Da PI: 4.6925 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 35.3 | 1.6e-11 | 150 | 222 | 1 | 73 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn 73 l++lL+e A a+s ++l +a+++L +l ++asp+g + +R++ayf++A+a+r + +s l++ l++s+++++ Neem_24181_f_1 150 LITLLFESAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMASRPST-MSLLSSNLHTSPQTKQP 222 5789*******************************9999**************998.88888888888887654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.457 | 124 | 233 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.6E-9 | 150 | 222 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MMKGGFEVVR GALEMIQPHE RWDYSSIGFP TPSPNSFPIP TSNVIDNRCA NLERNDLSEW 60 VEHVTKQLID DLPDANSDSL QADAMMVCEN NPIPSILGDL RTRKTMRRSY FEGNGEEFQW 120 VNELGNQTNV CENGSSNRVL TKVDEQGLSL ITLLFESAVA ISVDNLGEAH RMLLELTQMA 180 SPYGPSCAER VVAYFAKAMA SRPSTMSLLS SNLHTSPQTK QPSRLFIVAI GFT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007050241.2 | 3e-91 | PREDICTED: protein SCARECROW | ||||
TrEMBL | B9H8P8 | 2e-89 | B9H8P8_POPTR; Uncharacterized protein | ||||
STRING | EOX94398 | 3e-90 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16005 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-11 | GRAS family protein |