PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_24113_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 228aa MW: 26511.5 Da PI: 9.7492

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_24113_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.3	1.4e-29	36	123	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+g+w+vt++++eHnH+l+ Neem_24113_f_1 36 FYDAYATHLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGNWVVTRFVKEHNHPLV 123 9*****************************************99.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-28	36	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MIQNLNEQEM VTTEGSSDME PYVGMEFESE EAAKVFYDAY ATHLGFIMRV DAFRRSMRDG 60 KVVWRRLVCN KEGFRKLRPR RSENRKPRAI TREGCKAMIV VKKEKTGNWV VTRFVKEHNH 120 PLVAMPVNGR RSALLSQTPL FLKEMLVVLS YSYCKSGERA GSDEKDVKIR ELTAELQRER 180 KRSAAYQEQL EMVLRDMEDH SHHLSRNIDD IVQSVKEIEA KRAAVSRC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447969.1	1e-132	protein FAR1-RELATED SEQUENCE 1
Refseq	XP_006492211.1	1e-132	protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A2H5PH26	1e-133	A0A2H5PH26_CITUN; Uncharacterized protein
STRING	XP_006492211.1	1e-132	(Citrus sinensis)
STRING	XP_006447969.1	1e-132	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-89	FAR1 family protein