PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_24084_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 24783.7 Da PI: 8.0751 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.7e-19 | 15 | 67 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le +Fe ++ p +++++LA++lgL+ rqV +WFqN+Ra+ k Neem_24084_f_2 15 KKRFSDEQIKSLEFMFEAESRPESRMKQRLADELGLQPRQVAIWFQNKRARSK 67 668************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 107.4 | 1.1e-34 | 14 | 103 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +k+r+s+eq+k+LE +Fe+e++ e++ K++la eLglqprqva+WFqn+RAR ktkq+E++y++Lk+++++l+++ e L++++++L ++ Neem_24084_f_2 14 NKKRFSDEQIKSLEFMFEAESRPESRMKQRLADELGLQPRQVAIWFQNKRARSKTKQIEHEYNKLKAEFEKLASNYELLKRDNHSLLLQV 103 79***********************************************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.07 | 9 | 69 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.0E-16 | 11 | 73 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.77E-17 | 11 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-16 | 14 | 67 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.71E-13 | 15 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 15 | 76 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.7E-5 | 40 | 49 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 44 | 67 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.7E-5 | 49 | 65 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.3E-10 | 69 | 104 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MNVEAIASIR MSNNKKRFSD EQIKSLEFMF EAESRPESRM KQRLADELGL QPRQVAIWFQ 60 NKRARSKTKQ IEHEYNKLKA EFEKLASNYE LLKRDNHSLL LQVRYSSSKL SADYISSVIR 120 EHYSKTICCR QLQKLKNILG KSHDGSSNGK SENEDTTESK QVPSKTCVPF ESTVEDIAVM 180 SLEEHTESSG NWGRFDSGFL DQSSSTSQWW ELWS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024954935.1 | 1e-81 | homeobox-leucine zipper protein ATHB-12-like isoform X1 | ||||
TrEMBL | A0A2H5QJH5 | 9e-79 | A0A2H5QJH5_CITUN; Uncharacterized protein | ||||
TrEMBL | A0A2H5QJH6 | 1e-79 | A0A2H5QJH6_CITUN; Uncharacterized protein | ||||
STRING | XP_006476286.1 | 4e-80 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18057 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-34 | homeobox 7 |