PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24057_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 362aa    MW: 40995.3 Da    PI: 5.229
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24057_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA23.29.5e-08164202134
            GATA   1 CsnCgttkTplWRrgpdgnkt.....LCnaCGlyyrkkg 34 
                     C++C+  k+++W  gp+g+k+     LC aC   y k++
  Neem_24057_f_2 164 CVSCHFQKSSQWITGPEGPKMpflqsLCDACRSIYGKER 202
                     ********************99999******99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-5159200No hitNo description
Gene3DG3DSA:3.30.50.103.3E-4161205IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5152516.57281362IPR027353NET domain
PfamPF170353.2E-18290352IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MELLSQDEDF LPFASRTSEF TRRNYGGFRS MEKSKDSFNG IFSSFSNSIG GELSDVKKER  60
LKSLLRQGVF DLTPEVDEML DPVISMCQLQ FQLRRKCSSN FNGAAAENDA EQVPRKKLKT  120
SSCSSASTLN GGSCREDSVA NHIDSKSSDA ASLEKEITNF NKNCVSCHFQ KSSQWITGPE  180
GPKMPFLQSL CDACRSIYGK ERDLHSDSNM VADKENGEVD PAISDTRFKI VLLAGEFQMV  240
NDDLQFLLDT NGPQVDKTVK KYSDELLAKL EHMEQQLEEL LNAVVSKCRP MTRAEKQELR  300
KLIQMLPQHN LNRVVEIVQH SKLAETRSSG ELFVDLEQED NVTLWRLYYY VKAVEKAREL  360
LV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193118RRKCSSNFNGAAAENDAEQVPRKKLK
2113119PRKKLKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470198.11e-158uncharacterized protein LOC102630506
RefseqXP_006470199.11e-158uncharacterized protein LOC102630506
TrEMBLA0A067ECP41e-158A0A067ECP4_CITSI; Uncharacterized protein
STRINGXP_006470198.11e-157(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM452023