PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2401_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 290aa    MW: 30682.1 Da    PI: 9.1404
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2401_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.53.5e-392989262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   +e+ lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Neem_2401_f_3 29 PEAPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 89
                   67889*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-361387IPR003851Zinc finger, Dof-type
PfamPF027016.8E-333287IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.7393387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGGGGGGGTG STRPNSMAER ARLAKIPQPE APLKCPRCDS TNTKFCYFNN YSLSQPRHFC  60
KTCRRYWTRG GALRNVPVGG GCRRNKRSKG TNRSKSPAVT DGQATGPASS NALSSSRCTT  120
DIIGHLTNSQ PQIPLLPTLH HLTDYNSGNI GLNFGGIQAP SVAAGGACNG NEIGFQVGCG  180
SSGAGSILSS GLLEQWKLQQ VQQFPFLSAG LEQGTGLYSF ESEGVEPQGY IGQLRSKPSD  240
SGNTTVKIEE NQALHLSRNF LGVSGNDQYW STNAWTDLSG FTSSSTSHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436002.11e-141dof zinc finger protein DOF3.6
RefseqXP_006486095.11e-141dof zinc finger protein DOF3.6
TrEMBLA0A2H5QW371e-140A0A2H5QW37_CITUN; Uncharacterized protein
TrEMBLV4T7R31e-140V4T7R3_9ROSI; Uncharacterized protein
STRINGXP_006486095.11e-141(Citrus sinensis)
STRINGXP_006436002.11e-141(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.15e-64OBF-binding protein 3