PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_2385_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 423aa MW: 46631 Da PI: 9.2277 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.5 | 1.9e-12 | 3 | 27 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk e+Cr+f+r G C+yG+rCkF H+ Neem_2385_f_4 3 YKKEPCRNFQR-GSCQYGERCKFLHV 27 9**********.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.2E-7 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-10 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-9 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.394 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MHYKKEPCRN FQRGSCQYGE RCKFLHVTPQ QPKSNNAFGF GTQAGSQQQQ NSNPFGFGVQ 60 SSPQSKGANK FGNKQNQFKP FENKWSRLAN SNAASSRQPD NQAQCTDPDS CKRIIAEDFE 120 HERPLWKLTC YGHLKYAPCD IVGDISYEEL RAAAYDEAKR GLSLQSIVEF HFRTFFASSL 180 IQQISLQVER ERNLLNSKLM EFDNVLRNPY TGPFNNVLVR QNPFPPAIPS AFSPTPQNSA 240 PPAVSTFSQL GSSLNTGLGT RHEMPFAPSN NPFGESNSFP NSSMTSGAFG TNNLPSANAG 300 PFDSRFPAQA ISNPFTSNMT SFNNGGIVGA RSNKFAAPAL SNPTPFSVGN QPSIPSIGPV 360 SSSTAPEQAT TNIQLVKNLQ RETVTGDTGV WLKDKWIPGE VWNFIFALSF QQNLQLRPFP 420 LHV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006473927.1 | 1e-164 | zinc finger CCCH domain-containing protein 16 isoform X4 | ||||
TrEMBL | V4U297 | 1e-162 | V4U297_9ROSI; Uncharacterized protein | ||||
STRING | XP_006473927.1 | 1e-163 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10724 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 5e-70 | C3H family protein |