PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_23824_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | G2-like | ||||||||
Protein Properties | Length: 397aa MW: 44088.6 Da PI: 8.3656 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.7 | 1.1e-32 | 252 | 307 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Neem_23824_f_1 252 KQRRCWSPELHRRFVSALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 307 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.93E-18 | 249 | 310 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.66 | 249 | 309 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 250 | 310 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-26 | 252 | 307 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.4E-8 | 254 | 305 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MGTVSPELSL DFRPTFVPKT ITDFLRDVSM IGNVSEKVSK LDGFVKGLEE EMRKIDAFKR 60 ELPLCMLLLN DAILVLKEES MQCITASKKV QPVLEEFIPL KKNNCEDEDE DVSPIKKEKD 120 SSKDNKKNWM SSVQLWNTDD HQTSDPLFET KQNPNLKIKR NEEENPLQAC KGAGTRAFMP 180 FKTYPVFAKK EEKGELPVHG LSLVTPGMKN PREDTGSSGS RTSCSKSVSS APNVQSNLRT 240 GPHLPQQQTT RKQRRCWSPE LHRRFVSALQ QLGGSQVATP KQIRELMQVD GLTNDEVKSH 300 LQKYRLHTRR TPSATSPAPA NQSTVVLGSL WMAQDRYGES SKASSSQSGS PQGPLQLGGN 360 TGGTSTTGGD SMEDDEDAKS EGYSWKSHIH RPGKDNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 252 | 305 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 252 | 305 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-13 | 252 | 305 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 252 | 305 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 252 | 305 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 252 | 305 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 252 | 305 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 252 | 305 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 252 | 305 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 252 | 305 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 252 | 305 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 252 | 305 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00193 | DAP | Transfer from AT1G49560 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147597 | 1e-65 | EF147597.1 Populus trichocarpa clone WS0123_L02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006480140.1 | 0.0 | transcription factor HHO2-like | ||||
TrEMBL | A0A2H5Q0P0 | 0.0 | A0A2H5Q0P0_CITUN; Uncharacterized protein | ||||
STRING | XP_006480140.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14535 | 10 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 5e-55 | G2-like family protein |