PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_23813_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Trihelix | ||||||||
Protein Properties | Length: 243aa MW: 28913.3 Da PI: 8.3996 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.7 | 1.8e-14 | 45 | 104 | 2 | 66 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+++e laL+++r+++e+++ + We+vs+k+ e g++rs+++Ckek+e+ ++ + +++ Neem_23813_f_1 45 WSNDELLALLRIRSSLENWFPEL-----TWEHVSRKLDELGYKRSAEKCKEKFEEESRSFNNMNY 104 ********************987.....9****************************99998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.353 | 43 | 96 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.4E-10 | 44 | 106 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MQPSAAAPKN EEKEEKINRS SSLVGMNNLE TERERSIAEP VDSAWSNDEL LALLRIRSSL 60 ENWFPELTWE HVSRKLDELG YKRSAEKCKE KFEEESRSFN NMNYNKNYRI FFSEFVDEYD 120 DEEQLYHGRQ NPQKVEQNKK MEQPRGEEEE DKTTHEQNLE GDPTNNQTVG NKPSDRPQDK 180 ENRLVEKALL KGKKRKRDEN FEIEMKRRLR EKKLGRSKKW IGLTRNLKLG LLNKQLRVID 240 KQQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023913154.1 | 3e-45 | trihelix transcription factor GTL2 | ||||
TrEMBL | V4T9I8 | 3e-42 | V4T9I8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006471910.1 | 3e-43 | (Citrus sinensis) | ||||
STRING | XP_006432981.1 | 5e-43 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8268 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 6e-16 | Trihelix family protein |